bcgsc/mavis:v3.0.0

Manifest digest

sha256:72e0866461b325db4f2e5bd32dbc8d0e7268c1da91ad24eea7b7b05e4159adc5

OS/ARCH

linux/amd64

Compressed size

288.88 MB

Last pushed

over 4 years by creisle

Type

Image

Manifest digest

sha256:72e0866461b325db4f2e5bd32dbc8d0e7268c1da91ad24eea7b7b05e4159adc5

Image Layers

Image Layers

1ADD file ... in / 25.9 MB

2CMD ["bash"]0 B

3ENV PATH=/usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B

4ENV LANG=C.UTF-80 B

5/bin/sh -c set -eux; apt-get2.64 MB

6ENV GPG_KEY=0D96DF4D4110E5C43FBFB17F2D347EA6AA65421D0 B

7ENV PYTHON_VERSION=3.7.120 B

8/bin/sh -c set -eux; savedAptMark="$(apt-mark9.59 MB

9/bin/sh -c set -eux; for235 B

10ENV PYTHON_PIP_VERSION=21.2.40 B

11ENV PYTHON_SETUPTOOLS_VERSION=57.5.00 B

12ENV PYTHON_GET_PIP_URL=https://github.com/pypa/get-pip/raw/2caf84b14febcda8077e59e9b8a6ef9a680aa392/public/get-pip.py0 B

13ENV PYTHON_GET_PIP_SHA256=7c5239cea323cadae36083079a5ee6b2b3d56f25762a0c060d2867b89e5e06c50 B

14/bin/sh -c set -eux; savedAptMark="$(apt-mark2.52 MB

15CMD ["python3"]0 B

16WORKDIR /app92 B

17/bin/sh -c apt-get update &&82.99 MB

18/bin/sh -c apt-get install -y987.68 KB

19/bin/sh -c git clone https://github.com/lh3/bwa.git3.75 MB

20/bin/sh -c git clone https://github.com/lh3/minimap2.git3.75 MB

21/bin/sh -c apt-get install -y395.24 KB

22/bin/sh -c wget http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/blat/blat &&2.55 MB

23/bin/sh -c git clone https://github.com/ruanjue/wtdbg2.git3.28 MB

24COPY file:2e1449e31ae1100fa1f26e7f367faf72d5f62c67c89f477590e311dd6a0c2579 in setup.py 474 B

25COPY file:5a4a532ecc05e04da002edd33c3f0f345f7b6608e46506e3e14b61f3d07bda0c in setup.cfg 1008 B

26COPY file:ce5f030f43d22f7c7868e1b20e673eb33123bc3fe3f5511ec8940c440f830594 in MANIFEST.in 226 B

27COPY file:f4dbe9c2ff2ec2303f53eb452221d231c36a9970777a8f19cd3be2367d3f934e in pyproject.toml 179 B

28COPY dir:5cd14e6a5739a5896c231c7b12d59eb32bb6c8cf83f007f5cf6638a58d4ac4f9 in src 161.11 KB

29COPY file:a674bfc08980006dcd6a50e016a2d7078be01b30fd6aaa36568130bf40e230b5 in LICENSE 11.94 KB

30COPY file:4f8a59b2fa265280e3913a4c6991a77785268297a434008ed7e99ad46edc492c in README.md 1.29 KB

31/bin/sh -c pip install -U9.44 MB

32/bin/sh -c pip install .140.94 MB

33/bin/sh -c which mavis0 B

34ENTRYPOINT ["mavis"]0 B

Command

ADD file:c51141702f568a28a7e3e7a2748f5ead5754e32d7b1cf7ebc8f4326273d05206 in /