bcgsc/mavis:v3.1.1

Manifest digest

sha256:6c46331646145ab2ace51ba6fbc4669fec3d7fb286703baa0c07da3e2daf112e

OS/ARCH

linux/amd64

Compressed size

293.84 MB

Last pushed

over 3 years by creisle

Type

Image

Manifest digest

sha256:6c46331646145ab2ace51ba6fbc4669fec3d7fb286703baa0c07da3e2daf112e

Image Layers

Image Layers

1ADD file ... in / 25.88 MB

2CMD ["bash"]0 B

3ENV PATH=/usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B

4ENV LANG=C.UTF-80 B

5RUN /bin/sh -c set -eux;2.65 MB

6ENV GPG_KEY=0D96DF4D4110E5C43FBFB17F2D347EA6AA65421D0 B

7ENV PYTHON_VERSION=3.7.160 B

8RUN /bin/sh -c set -eux;10.23 MB

9RUN /bin/sh -c set -eux;245 B

10ENV PYTHON_PIP_VERSION=22.0.40 B

11ENV PYTHON_SETUPTOOLS_VERSION=57.5.00 B

12ENV PYTHON_GET_PIP_URL=https://github.com/pypa/get-pip/raw/d5cb0afaf23b8520f1bbcfed521017b4a95f5c01/public/get-pip.py0 B

13ENV PYTHON_GET_PIP_SHA256=394be00f13fa1b9aaa47e911bdb59a09c3b2986472130f30aa0bfaf7f39806370 B

14RUN /bin/sh -c set -eux;3.05 MB

15CMD ["python3"]0 B

16WORKDIR /app92 B

17/bin/sh -c apt-get update &&83.92 MB

18/bin/sh -c apt-get install -y988.21 KB

19/bin/sh -c git clone https://github.com/lh3/bwa.git3.79 MB

20/bin/sh -c git clone https://github.com/lh3/minimap2.git3.73 MB

21/bin/sh -c apt-get install -y396.6 KB

22/bin/sh -c wget http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/blat/blat &&2.56 MB

23/bin/sh -c git clone https://github.com/ruanjue/wtdbg2.git3.28 MB

24COPY file:2e1449e31ae1100fa1f26e7f367faf72d5f62c67c89f477590e311dd6a0c2579 in setup.py 476 B

25COPY file:c4a9bf335a7600b4388124b08d5fcd3cbad7bf6bbf386f0802b7b0f5e205c96b in setup.cfg 1.01 KB

26COPY file:ce5f030f43d22f7c7868e1b20e673eb33123bc3fe3f5511ec8940c440f830594 in MANIFEST.in 227 B

27COPY file:f4dbe9c2ff2ec2303f53eb452221d231c36a9970777a8f19cd3be2367d3f934e in pyproject.toml 180 B

28COPY dir:8ce85306bf55cac491bf42bad6834c7c1cb0138ac0fefcce8813fa7af546a684 in src 165.49 KB

29COPY file:a674bfc08980006dcd6a50e016a2d7078be01b30fd6aaa36568130bf40e230b5 in LICENSE 11.94 KB

30COPY file:ed7d06421d25eb30973bb0f5fc78de7cb6563fe3d3c94e72534ae8bd37b9d8e0 in README.md 1.3 KB

31/bin/sh -c pip install -U9.38 MB

32/bin/sh -c pip install .143.83 MB

33/bin/sh -c which mavis0 B

34ENTRYPOINT ["mavis"]0 B

Command

ADD file:52316aa7d631242cd16337be337e57187ef07d3965e6284321fbdcd5b4f92b64 in /