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biocontainers/mitohifi:3.0.0_cv1

Manifest digest

sha256:d42e17b5476ebf24131756b10c5f8b824264003a661aa0520bfd1f8553236e04

OS/ARCH

linux/amd64

Compressed size

4.02 GB

Last pushed

over 3 years by biocontainersci

Type

Image

Manifest digest

sha256:d42e17b5476ebf24131756b10c5f8b824264003a661aa0520bfd1f8553236e04

Image Layers

Image Layers

1ARG RELEASE0 B
2ARG LAUNCHPAD_BUILD_ARCH0 B
3LABEL org.opencontainers.image.ref.name=ubuntu0 B
4LABEL org.opencontainers.image.version=18.040 B
5ADD file ... in / 24.5 MB
6CMD ["/bin/bash"]0 B
7LABEL base_image=ubuntu:18.040 B
8LABEL version=10 B
9LABEL software=MitoHiFi0 B
10LABEL software.version=3.0.00 B
11LABEL about.summary=a python workflow0 B
12LABEL about.home=https://github.com/marcelauliano/MitoHiFi0 B
13LABEL about.documentation=https://github.com/marcelauliano/MitoHiFi0 B
14LABEL about.license=MIT0 B
15LABEL about.license_file=https://github.com/marcelauliano/MitoHiFi/blob/master/LICENSE0 B
16LABEL about.tags=mitogenome, MT, organelle0 B
17LABEL extra.identifiers.biotools=MitoHiFi0 B
18MAINTAINER Ksenia Krasheninnikova [email protected]0 B
19ENV DEBIAN_FRONTEND=noninteractive0 B
20/bin/sh -c apt-get -qq -y356.21 MB
21WORKDIR /opt0 B
22/bin/sh -c curl -L https://github.com/lh3/minimap2/releases/download/v2.24/minimap2-2.24_x64-linux.tar.bz22.23 MB
23/bin/sh -c git clone https://github.com/RemiAllio/MitoFinder.git715.82 MB
24/bin/sh -c git clone https://github.com/marcelauliano/MitoHiFi.git74.53 MB
25/bin/sh -c curl -L https://github.com/chhylp123/hifiasm/archive/refs/tags/0.16.1.tar.gz34.17 MB
26/bin/sh -c wget -P /usr/local/src301.42 MB
27/bin/sh -c /opt/conda/bin/conda create -n1.85 GB
28/bin/sh -c useradd -m mu4.45 KB
29/bin/sh -c chown -R mu:mu715.81 MB
30USER mu0 B
31WORKDIR /tmp0 B
32ENV PATH=/opt/minimap2-2.24_x64-linux/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
33ENV PATH=/opt/MitoFinder/:/opt/minimap2-2.24_x64-linux/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
34ENV PATH=/opt/MitoHiFi/:/opt/MitoFinder/:/opt/minimap2-2.24_x64-linux/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
35ENV PATH=/opt/hifiasm-0.16.1/:/opt/MitoHiFi/:/opt/MitoFinder/:/opt/minimap2-2.24_x64-linux/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
36ENV PATH=/opt/conda/envs/mitos_env/bin/clean/:/opt/hifiasm-0.16.1/:/opt/MitoHiFi/:/opt/MitoFinder/:/opt/minimap2-2.24_x64-linux/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B

Command

 ARG RELEASE