ctomlins/variant_vcf_toolkit:latest

Multi-platform

Index digest

sha256:7b27a55d4cdb222f6814ddfacbf26e437bb18a75038e7088b93e3ef484de728f

OS/ARCH

Compressed size

414.68 MB

Last pushed

4 months by ctomlins

Type

Image

Manifest digest

sha256:c11f7e485cd9d8cfbb9839a34481dc62e2d24c41a91b138881796164854efbf9

Image Layers

1ARG RELEASE0 B

2ARG LAUNCHPAD_BUILD_ARCH0 B

3LABEL org.opencontainers.image.version=24.040 B

4ADD file ... in / 28.36 MB

5CMD ["/bin/bash"]0 B

6ARG DEBIAN_FRONTEND=noninteractive0 B

7ARG HTSLIB_VERSION=1.23.10 B

8ARG SAMTOOLS_VERSION=1.23.10 B

9ARG BCFTOOLS_VERSION=1.23.10 B

10ARG VCFTOOLS_VERSION=0.1.170 B

11ARG RTGTOOLS_VERSION=3.130 B

12ARG TRUVARI_VERSION=5.4.00 B

13ARG PYSAM_VERSION=0.23.30 B

14ENV TZ=Etc/UTC LANG=C.UTF-8 LC_ALL=C.UTF-8 PYTHONDONTWRITEBYTECODE=10 B

15SHELL [/bin/bash -o pipefail -c]0 B

16RUN |8 DEBIAN_FRONTEND=noninteractive HTSLIB_VERSION=1.23.1 SAMTOOLS_VERSION=1.23.1275.49 MB

17RUN |8 DEBIAN_FRONTEND=noninteractive HTSLIB_VERSION=1.23.1 SAMTOOLS_VERSION=1.23.113.67 MB

18RUN |8 DEBIAN_FRONTEND=noninteractive HTSLIB_VERSION=1.23.1 SAMTOOLS_VERSION=1.23.11.68 MB

19RUN |8 DEBIAN_FRONTEND=noninteractive HTSLIB_VERSION=1.23.1 SAMTOOLS_VERSION=1.23.13.95 MB

20RUN |8 DEBIAN_FRONTEND=noninteractive HTSLIB_VERSION=1.23.1 SAMTOOLS_VERSION=1.23.15.73 MB

21RUN |8 DEBIAN_FRONTEND=noninteractive HTSLIB_VERSION=1.23.1 SAMTOOLS_VERSION=1.23.18.62 MB

22RUN |8 DEBIAN_FRONTEND=noninteractive HTSLIB_VERSION=1.23.1 SAMTOOLS_VERSION=1.23.177.12 MB

23COPY vcf_compare_wrapper.py /usr/local/bin/vcf_compare_wrapper.py # buildkit7.02 KB

24COPY filter_normalize_variant_vcf.sh /usr/local/bin/filter_normalize_variant_vcf.sh # buildkit5.37 KB

25COPY integrate_pangenie_deepvariant_rtg.sh /usr/local/bin/integrate_pangenie_deepvariant_rtg.sh # buildkit8.39 KB

26COPY compare_tumor_normal_pangenie_vcfs.sh /usr/local/bin/compare_tumor_normal_pangenie_vcfs.sh # buildkit4.6 KB

27COPY compile_integration_variant_metrics.py /usr/local/bin/compile_integration_variant_metrics.py # buildkit2.9 KB

28COPY compile_updated_graph_integration_metrics.py /usr/local/bin/compile_updated_graph_integration_metrics.py # buildkit3.4 KB

29COPY convert-to-biallelic.py /usr/local/bin/convert-to-biallelic.py # buildkit1.6 KB

30RUN |8 DEBIAN_FRONTEND=noninteractive HTSLIB_VERSION=1.23.1 SAMTOOLS_VERSION=1.23.128.58 KB

31RUN |8 DEBIAN_FRONTEND=noninteractive HTSLIB_VERSION=1.23.1 SAMTOOLS_VERSION=1.23.132 B

32WORKDIR /work94 B

33CMD ["/bin/bash"]0 B

Command

 ARG RELEASE