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databio/pepatac:0.10.1

Manifest digest

sha256:162388fba0c0ed65c76abf478bde183d170685eadff2476782d0636a7c3b1351

OS/ARCH

linux/amd64

Compressed size

4.34 GB

Last pushed

almost 5 years by jpsmith5

Type

Image

Manifest digest

sha256:162388fba0c0ed65c76abf478bde183d170685eadff2476782d0636a7c3b1351

Image Layers

Image Layers

1ADD file ... in / 27.25 MB
2CMD ["bash"]0 B
3ARG QEMU_ARCH0 B
4COPY . /bd_build # buildkit14.85 KB
5RUN |1 QEMU_ARCH= /bin/sh -c53.83 MB
6ENV DEBIAN_FRONTEND=teletype LANG=en_US.UTF-8 LANGUAGE=en_US:en LC_ALL=en_US.UTF-80 B
7CMD ["/sbin/my_init"]0 B
8LABEL maintainer=Jason Smith [email protected]0 B
9LABEL version=0.10.00 B
10CMD ["/sbin/my_init"]0 B
11RUN /bin/sh -c add-apt-repository ppa:deadsnakes/ppa38.86 MB
12RUN /bin/sh -c apt-get update690.71 MB
13RUN /bin/sh -c DEBIAN_FRONTEND=noninteractive apt-get102.62 MB
14RUN /bin/sh -c python3.8 -m4.02 MB
15RUN /bin/sh -c pip install32.46 MB
16RUN /bin/sh -c pip install83.21 MB
17RUN /bin/sh -c apt update181.56 KB
18RUN /bin/sh -c apt-key adv237.29 KB
19RUN /bin/sh -c DEBIAN_FRONTEND=noninteractive apt-get76.13 MB
20RUN /bin/sh -c Rscript -e197.85 MB
21RUN /bin/sh -c Rscript -e4.31 MB
22RUN /bin/sh -c DEBIAN_FRONTEND=noninteractive apt-get3.8 MB
23WORKDIR /home/tools/148 B
24RUN /bin/sh -c wget https://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.9.zip19.39 MB
25WORKDIR /home/src/146 B
26RUN /bin/sh -c wget https://github.com/samtools/htslib/releases/download/1.12/htslib-1.12.tar.bz258.34 MB
27WORKDIR /home/tools/32 B
28RUN /bin/sh -c pip install6.52 MB
29WORKDIR /home/src/32 B
30RUN /bin/sh -c wget https://github.com/samtools/samtools/releases/download/1.12/samtools-1.12.tar.bz242.37 MB
31WORKDIR /home/tools/32 B
32RUN /bin/sh -c wget https://github.com/smithlabcode/preseq/releases/download/v3.1.2/preseq-3.1.2.tar.gz13.65 MB
33WORKDIR /home/src/32 B
34RUN /bin/sh -c wget -O54.64 MB
35WORKDIR /home/tools/32 B
36RUN /bin/sh -c git clone508.98 KB
37WORKDIR /home/tools/32 B
38RUN /bin/sh -c wget http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/bedGraphToBigWig15.85 MB
39WORKDIR /home/src/32 B
40RUN /bin/sh -c git clone370.38 KB
41WORKDIR /home/src/32 B
42RUN /bin/sh -c wget -O2.3 MB
43WORKDIR /home/src/32 B
44RUN /bin/sh -c pip install499.4 KB
45RUN /bin/sh -c wget https://github.com/Boyle-Lab/F-Seq2/archive/master.zip70.59 MB
46WORKDIR /home/tools/32 B
47RUN /bin/sh -c wget http://genometools.org/pub/genometools-1.6.1.tar.gz107.61 MB
48WORKDIR /home/tools/32 B
49RUN /bin/sh -c git clone739.55 KB
50WORKDIR /home/tools/bin166 B
51RUN /bin/sh -c wget https://github.com/LiuLabUB/HMMRATAC/releases/download/1.2.10/HMMRATAC_V1.2.10_exe.jar26.14 MB
52WORKDIR /home/tools/bin32 B
53RUN /bin/sh -c wget http://homer.ucsd.edu/homer/configureHomer.pl55.84 MB
54WORKDIR /home/tools/32 B
55RUN /bin/sh -c git clone610.46 MB
56WORKDIR /home/tools/bin32 B
57RUN /bin/sh -c wget https://github.com/broadinstitute/picard/releases/download/2.25.2/picard.jar15.97 MB
58WORKDIR /home/tools/32 B
59RUN /bin/sh -c wget -O169.95 MB
60WORKDIR /home/src/32 B
61RUN /bin/sh -c wget https://github.com/usadellab/Trimmomatic/files/5854859/Trimmomatic-0.39.zip260.57 KB
62WORKDIR /home/src/32 B
63RUN /bin/sh -c git clone156.68 KB
64ENV JAVA_HOME=/usr/lib/jvm/java-8-openjdk-amd64/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/bin0 B
65RUN /bin/sh -c cd /home/src/F-seq226.5 KB
66ENV PATH=/home/tools/bin:/home/tools/:/home/tools/bin/kentUtils/:/home/src/bowtie2-2.4.2:/home/src/skewer:/home/src/samtools-1.12:/home/src/Trimmomatic-0.39/:/home/src/htslib-1.12:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/bin TRIMMOMATIC=/home/src/Trimmomatic-0.39/trimmomatic-0.39.jar PICARD=/home/tools/bin/picard.jar HMMRATAC=/home/tools/bin/HMMRATAC_V1.2.10_exe.jar0 B
67RUN /bin/sh -c echo 'alias1.54 KB
68RUN /bin/sh -c update-alternatives --install4.56 KB
69WORKDIR /home/32 B
70CMD ["/bin/bash"]0 B
71RUN /bin/sh -c apt-get clean1.06 KB
72/bin/bash1.81 GB

Command

ADD file:d2abf27fe2e8b0b5f4da68c018560c73e11c53098329246e3e6fe176698ef941 in /