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databio/rpipe:0.2.6

Manifest digest

sha256:80740aaedc7ba0a32fd0e4896110d515b1e285da2389d548b8918ee728df65bc

OS/ARCH

linux/amd64

Compressed size

3.39 GB

Last pushed

almost 5 years by jpsmith5

Type

Image

Manifest digest

sha256:80740aaedc7ba0a32fd0e4896110d515b1e285da2389d548b8918ee728df65bc

Image Layers

Image Layers

1ADD file ... in / 27.25 MB
2CMD ["bash"]0 B
3LABEL org.opencontainers.image.licenses=GPL-2.0-or-later org.opencontainers.image.source=https://github.com/rocker-org/rocker-versioned2 org.opencontainers.image.vendor=Rocker Project0 B
4ENV R_VERSION=4.1.10 B
5ENV TERM=xterm0 B
6ENV LC_ALL=en_US.UTF-80 B
7ENV LANG=en_US.UTF-80 B
8ENV R_HOME=/usr/local/lib/R0 B
9ENV CRAN=https://packagemanager.rstudio.com/all/__linux__/focal/latest0 B
10ENV TZ=Etc/UTC0 B
11COPY scripts/install_R.sh /rocker_scripts/install_R.sh # buildkit1.86 KB
12RUN /bin/sh -c /rocker_scripts/install_R.sh #282.14 MB
13COPY scripts /rocker_scripts # buildkit17.42 KB
14CMD ["R"]0 B
15LABEL org.opencontainers.image.licenses=GPL-2.0-or-later org.opencontainers.image.source=https://github.com/rocker-org/rocker-versioned2 org.opencontainers.image.vendor=Rocker Project0 B
16ENV S6_VERSION=v2.1.0.20 B
17ENV RSTUDIO_VERSION=1.4.17170 B
18ENV DEFAULT_USER=rstudio0 B
19ENV PATH=/usr/lib/rstudio-server/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
20RUN /bin/sh -c /rocker_scripts/install_rstudio.sh #208.27 MB
21RUN /bin/sh -c /rocker_scripts/install_pandoc.sh #25.96 KB
22EXPOSE map[8787/tcp:{}]0 B
23CMD ["/init"]0 B
24ARG BIOCONDUCTOR_VERSION=3.130 B
25ARG BIOCONDUCTOR_PATCH=370 B
26ARG BIOCONDUCTOR_DOCKER_VERSION=3.13.370 B
27LABEL name=bioconductor/bioconductor_docker version=3.13.37 url=https://github.com/Bioconductor/bioconductor_docker vendor=Bioconductor0 B
28RUN |3 BIOCONDUCTOR_VERSION=3.13 BIOCONDUCTOR_PATCH=37 BIOCONDUCTOR_DOCKER_VERSION=3.13.37244 B
29RUN |3 BIOCONDUCTOR_VERSION=3.13 BIOCONDUCTOR_PATCH=37 BIOCONDUCTOR_DOCKER_VERSION=3.13.37212 B
30ENV DEBIAN_FRONTEND=noninteractive0 B
31RUN |3 BIOCONDUCTOR_VERSION=3.13 BIOCONDUCTOR_PATCH=37 BIOCONDUCTOR_DOCKER_VERSION=3.13.37602.12 MB
32RUN |3 BIOCONDUCTOR_VERSION=3.13 BIOCONDUCTOR_PATCH=37 BIOCONDUCTOR_DOCKER_VERSION=3.13.37171.52 MB
33RUN |3 BIOCONDUCTOR_VERSION=3.13 BIOCONDUCTOR_PATCH=37 BIOCONDUCTOR_DOCKER_VERSION=3.13.374.6 MB
34RUN |3 BIOCONDUCTOR_VERSION=3.13 BIOCONDUCTOR_PATCH=37 BIOCONDUCTOR_DOCKER_VERSION=3.13.37268 B
35ADD install.R /tmp/ # buildkit262 B
36RUN |3 BIOCONDUCTOR_VERSION=3.13 BIOCONDUCTOR_PATCH=37 BIOCONDUCTOR_DOCKER_VERSION=3.13.3747.3 MB
37RUN |3 BIOCONDUCTOR_VERSION=3.13 BIOCONDUCTOR_PATCH=37 BIOCONDUCTOR_DOCKER_VERSION=3.13.37340 B
38ENV LIBSBML_CFLAGS=-I/usr/include0 B
39ENV LIBSBML_LIBS=-lsbml0 B
40ENV BIOCONDUCTOR_DOCKER_VERSION=3.13.370 B
41ENV BIOCONDUCTOR_VERSION=3.130 B
42CMD ["/init"]0 B
43MAINTAINER Nathan Sheffield <[email protected]>0 B
44LABEL version=0.2.30 B
45ENV _R_INSTALL_PACKAGES_ELAPSED_TIMEOUT_=00 B
46RUN /bin/sh -c Rscript -e53.48 KB
47RUN /bin/sh -c Rscript -e85.97 KB
48RUN /bin/sh -c Rscript -e387.16 KB
49RUN /bin/sh -c Rscript -e8.9 MB
50RUN /bin/sh -c Rscript -e319.82 KB
51RUN /bin/sh -c Rscript -e7.02 MB
52RUN /bin/sh -c Rscript -e218 B
53RUN /bin/sh -c Rscript -e36.63 MB
54RUN /bin/sh -c Rscript -e34.82 MB
55RUN /bin/sh -c Rscript -e2.6 MB
56RUN /bin/sh -c Rscript -e48.41 MB
57RUN /bin/sh -c Rscript -e3.45 MB
58RUN /bin/sh -c Rscript -e3.64 MB
59RUN /bin/sh -c Rscript -e23.58 MB
60RUN /bin/sh -c wget http://big.databio.org/GenomicDistributionsData/GenomicDistributionsData_0.0.2.tar.gz927.59 MB
61RUN /bin/sh -c Rscript -e217 B
62RUN /bin/sh -c git clone62.51 MB
63RUN /bin/sh -c cd peppro517.12 KB
64RUN /bin/sh -c rm -rf96 B
65RUN /bin/sh -c git clone34.46 MB
66RUN /bin/sh -c cd pepatac1.49 MB
67RUN /bin/sh -c rm -rf94 B
68RUN /bin/sh -c echo "R_LIBS=/usr/local/lib/R/host-site-library:\${R_LIBS}"506 B
69/bin/bash927.94 MB

Command

ADD file:d2abf27fe2e8b0b5f4da68c018560c73e11c53098329246e3e6fe176698ef941 in /