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filo/fmriprep:codefresh

Manifest digest

sha256:6ca35b09e3e692d48590cad529023dde13b64c688edc2d7b67416aaffa1d7e4d

OS/ARCH

linux/amd64

Compressed size

4.06 GB

Last pushed

over 9 years by filo

Type

Image

Manifest digest

sha256:6ca35b09e3e692d48590cad529023dde13b64c688edc2d7b67416aaffa1d7e4d

Image Layers

Image Layers

1ADD file ... in / 47.89 MB
2/bin/sh -c set -xe &&822 B
3/bin/sh -c rm -rf /var/lib/apt/lists/*514 B
4/bin/sh -c sed -i 's/^#\s*\(deb.*universe\)$/\1/g'681 B
5/bin/sh -c mkdir -p /run/systemd163 B
6CMD ["/bin/bash"]0 B
7COPY file:f7c44bc88d8d67222c44984563c9b16d353bb889dc8f916673ed98b6e4cbaed7 in /root/.neurodebian.gpg 3.29 KB
8/bin/sh -c apt-get update &&139.05 MB
9/bin/sh -c curl -sSL https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.0/freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0.tar.gz2.6 GB
10ENV FSL_DIR=/usr/share/fsl/5.0 OS=Linux FS_OVERRIDE=00 B
11ENV SUBJECTS_DIR=/opt/freesurfer/subjects FUNCTIONALS_DIR=/opt/freesurfer/sessions MNI_DIR=/opt/freesurfer/mni0 B
12ENV PERL5LIB=/opt/freesurfer/mni/lib/perl5/5.8.5 MNI_PERL5LIB=/opt/freesurfer/mni/lib/perl5/5.8.5 PATH=/opt/freesurfer/bin:/opt/freesurfer/fsfast/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
13/bin/sh -c echo "cHJpbnRmICJrcnp5c3p0b2YuZ29yZ29sZXdza2lAZ21haWwuY29tXG41MTcyXG4gKkN2dW12RVYzelRmZ1xuRlM1Si8yYzFhZ2c0RVxuIiA+IC9vcHQvZnJlZXN1cmZlci9saWNlbnNlLnR4dAo=" |238 B
14/bin/sh -c apt-get update &&116.16 MB
15ENV FSLDIR=/usr/share/fsl/5.0 FSLOUTPUTTYPE=NIFTI_GZ FSLMULTIFILEQUIT=TRUE0 B
16/bin/sh -c mkdir -p /opt/ants428.32 MB
17ENV ANTSPATH=/opt/ants0 B
18ENV PATH=/opt/ants:/usr/lib/fsl/5.0:/usr/lib/afni/bin:/opt/freesurfer/bin:/opt/freesurfer/fsfast/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
19/bin/sh -c mkdir -p /opt/c3d45.88 MB
20ENV C3DPATH=/opt/c3d/0 B
21ENV PATH=/opt/c3d//bin:/opt/ants:/usr/lib/fsl/5.0:/usr/lib/afni/bin:/opt/freesurfer/bin:/opt/freesurfer/fsfast/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
22/bin/sh -c curl -sSLO "http://downloads.webmproject.org/releases/webp/libwebp-0.5.2-linux-x86-64.tar.gz"4.23 MB
23/bin/sh -c curl -sL https://deb.nodesource.com/setup_7.x453.31 KB
24/bin/sh -c apt-get install -y16.49 MB
25/bin/sh -c npm install -g1.34 MB
26/bin/sh -c curl -sSLO https://repo.continuum.io/miniconda/Miniconda3-4.3.11-Linux-x86_64.sh38.37 MB
27ENV PATH=/usr/local/miniconda/bin:/opt/c3d//bin:/opt/ants:/usr/lib/fsl/5.0:/usr/lib/afni/bin:/opt/freesurfer/bin:/opt/freesurfer/fsfast/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin LANG=C.UTF-8 LC_ALL=C.UTF-80 B
28/bin/sh -c conda install -y361.82 MB
29/bin/sh -c python -c "from7.05 KB
30/bin/sh -c apt-get update &&18.51 MB
31ENV MKL_NUM_THREADS=1 OMP_NUM_THREADS=10 B
32WORKDIR /root/0 B
33ADD file ... in requirements.txt 317 B
34/bin/sh -c pip install -r20.86 MB
35COPY dir:14c8e2d58fe1f4e14ed52327da1ee0a227be4b57dbdbb4e6e479d7c4632e82c0 in /root/src/fmriprep 6.35 MB
36/bin/sh -c cd /root/src/fmriprep &&26.3 MB
37/bin/sh -c mkdir /niworkflows_data105 B
38ENV CRN_SHARED_DATA=/niworkflows_data0 B
39/bin/sh -c python -c 'from223.76 MB
40WORKDIR /root/src/fmriprep0 B
41ENTRYPOINT ["/usr/local/miniconda/bin/fmriprep"]0 B
42ARG BUILD_DATE0 B
43ARG VCS_REF0 B
44ARG VERSION0 B
45LABEL org.label-schema.build-date= org.label-schema.name=FMRIPREP org.label-schema.description=FMRIPREP0 B
46LABEL io.codefresh.repo.branch=codefresh io.codefresh.repo.hash=7457c70a723ab212301d0f3d05ec62dabd336850 io.codefresh.repo.name=fmriprep0 B

Command

ADD file:7529d28035b43a2281b9ba1d3cf6bde4f0d9517693e9412328761d51c24091b4 in /