google/deepvariant:deeptrio-latest-gpu

Integration & delivery

Machine learning & AI

Data science

Manifest digest

sha256:7ebb09ee76879002e52f65245b717c182fa94fc1b841abd411cb92eaea68fce5

OS/ARCH

linux/amd64

Compressed size

14.53 GB

Last pushed

7 months by pichuan

Type

Image

Manifest digest

sha256:7ebb09ee76879002e52f65245b717c182fa94fc1b841abd411cb92eaea68fce5

Image Layers

Image Layers

1ARG RELEASE0 B

2ARG LAUNCHPAD_BUILD_ARCH0 B

3LABEL org.opencontainers.image.ref.name=ubuntu0 B

4LABEL org.opencontainers.image.version=22.040 B

5ADD file ... in / 29.04 MB

6CMD ["/bin/bash"]0 B

7ENV NVARCH=x86_640 B

8

ENV NVIDIA_REQUIRE_CUDA=cuda>=12.3 brand=tesla,driver>=470,driver<471 brand=unknown,driver>=470,driver<471 brand=nvidia,driver>=470,driver<471

0 B

9ENV NV_CUDA_CUDART_VERSION=12.3.101-10 B

10ENV NV_CUDA_COMPAT_PACKAGE=cuda-compat-12-30 B

11ARG TARGETARCH0 B

12LABEL maintainer=NVIDIA CORPORATION <[email protected]>0 B

13RUN |1 TARGETARCH=amd64 /bin/sh -c4.41 MB

14ENV CUDA_VERSION=12.3.20 B

15RUN |1 TARGETARCH=amd64 /bin/sh -c54.43 MB

16RUN |1 TARGETARCH=amd64 /bin/sh -c185 B

17ENV PATH=/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B

18ENV LD_LIBRARY_PATH=/usr/local/nvidia/lib:/usr/local/nvidia/lib640 B

19COPY NGC-DL-CONTAINER-LICENSE / # buildkit6.72 KB

20ENV NVIDIA_VISIBLE_DEVICES=all0 B

21ENV NVIDIA_DRIVER_CAPABILITIES=compute,utility0 B

22ENV NV_CUDA_LIB_VERSION=12.3.2-10 B

23ENV NV_NVTX_VERSION=12.3.101-10 B

24ENV NV_LIBNPP_VERSION=12.2.3.2-10 B

25ENV NV_LIBNPP_PACKAGE=libnpp-12-3=12.2.3.2-10 B

26ENV NV_LIBCUSPARSE_VERSION=12.2.0.103-10 B

27ENV NV_LIBCUBLAS_PACKAGE_NAME=libcublas-12-30 B

28ENV NV_LIBCUBLAS_VERSION=12.3.4.1-10 B

29ENV NV_LIBCUBLAS_PACKAGE=libcublas-12-3=12.3.4.1-10 B

30ENV NV_LIBNCCL_PACKAGE_NAME=libnccl20 B

31ENV NV_LIBNCCL_PACKAGE_VERSION=2.20.3-10 B

32ENV NCCL_VERSION=2.20.3-10 B

33ENV NV_LIBNCCL_PACKAGE=libnccl2=2.20.3-1+cuda12.30 B

34ARG TARGETARCH0 B

35LABEL maintainer=NVIDIA CORPORATION <[email protected]>0 B

36RUN |1 TARGETARCH=amd64 /bin/sh -c1.2 GB

37RUN |1 TARGETARCH=amd64 /bin/sh -c62.43 KB

38COPY entrypoint.d/ /opt/nvidia/entrypoint.d/ # buildkit1.64 KB

39COPY nvidia_entrypoint.sh /opt/nvidia/ # buildkit1.49 KB

40ENV NVIDIA_PRODUCT_NAME=CUDA0 B

41ENTRYPOINT ["/opt/nvidia/nvidia_entrypoint.sh"]0 B

42ENV NV_CUDA_LIB_VERSION=12.3.2-10 B

43ENV NV_CUDA_CUDART_DEV_VERSION=12.3.101-10 B

44ENV NV_NVML_DEV_VERSION=12.3.101-10 B

45ENV NV_LIBCUSPARSE_DEV_VERSION=12.2.0.103-10 B

46ENV NV_LIBNPP_DEV_VERSION=12.2.3.2-10 B

47ENV NV_LIBNPP_DEV_PACKAGE=libnpp-dev-12-3=12.2.3.2-10 B

48ENV NV_LIBCUBLAS_DEV_VERSION=12.3.4.1-10 B

49ENV NV_LIBCUBLAS_DEV_PACKAGE_NAME=libcublas-dev-12-30 B

50ENV NV_LIBCUBLAS_DEV_PACKAGE=libcublas-dev-12-3=12.3.4.1-10 B

51ENV NV_CUDA_NSIGHT_COMPUTE_VERSION=12.3.2-10 B

52ENV NV_CUDA_NSIGHT_COMPUTE_DEV_PACKAGE=cuda-nsight-compute-12-3=12.3.2-10 B

53ENV NV_NVPROF_VERSION=12.3.101-10 B

54ENV NV_NVPROF_DEV_PACKAGE=cuda-nvprof-12-3=12.3.101-10 B

55ENV NV_LIBNCCL_DEV_PACKAGE_NAME=libnccl-dev0 B

56ENV NV_LIBNCCL_DEV_PACKAGE_VERSION=2.20.3-10 B

57ENV NCCL_VERSION=2.20.3-10 B

58ENV NV_LIBNCCL_DEV_PACKAGE=libnccl-dev=2.20.3-1+cuda12.30 B

59ARG TARGETARCH0 B

60LABEL maintainer=NVIDIA CORPORATION <[email protected]>0 B

61RUN |1 TARGETARCH=amd64 /bin/sh -c2.39 GB

62RUN |1 TARGETARCH=amd64 /bin/sh -c86.53 KB

63ENV LIBRARY_PATH=/usr/local/cuda/lib64/stubs0 B

64ENV NV_CUDNN_VERSION=9.0.0.3120 B

65ENV NV_CUDNN_PACKAGE_NAME=libcudnn9-cuda-120 B

66ENV NV_CUDNN_PACKAGE=libcudnn9-cuda-12=9.0.0.312-10 B

67ENV NV_CUDNN_PACKAGE_DEV=libcudnn9-dev-cuda-12=9.0.0.312-10 B

68ARG TARGETARCH0 B

69LABEL maintainer=NVIDIA CORPORATION <[email protected]>0 B

70LABEL com.nvidia.cudnn.version=9.0.0.3120 B

71RUN |1 TARGETARCH=amd64 /bin/sh -c644.01 MB

72ARG DV_GPU_BUILD0 B

73ARG VERSION_DEEPTRIO0 B

74ARG PYTHON_VERSION0 B

75ARG TF_ENABLE_ONEDNN_OPTS0 B

76ENV DV_GPU_BUILD=10 B

77ENV VERSION_DEEPTRIO=1.10.00 B

78ENV PYTHON_VERSION=3.100 B

79ENV TF_ENABLE_ONEDNN_OPTS=10 B

80WORKDIR /opt/0 B

81COPY file:b40f31c3f96cd5426749b2aeda630bd40dc38b600c830865bf515d2daced010e in . 21.98 KB

82WORKDIR /opt/deepvariant/bin/166 B

83COPY dir:88d9aee5b5815ade1718820771c60a0b167ec5804247a9f66dd52ffb798ec50d in /opt/conda 237.93 MB

84COPY file:42912294710604ad8b50522c738bf115df683953b627df9b58547b808fba4813 in . 4.79 KB

85COPY file:0c6d574bdce3ec5bcc8ea6850d129a1468ad4a2016893ae0222c48f051bfa430 in . 2.91 KB

86COPY file:311f078c0b00bb25ae5aa7959ef89a949279bfec5cabfa19267dd38ba4f40f4b in . 9.41 MB

87COPY file:4f32d9006bfa1a0635332dda4db9349af8d51fe9f3ae6002dc1835a3956cdabe in . 9.41 MB

88COPY file:f77a0f2625708f0742b3da48cb2930bac87415a0857943d509d129abcac928ec in . 9.32 MB

89COPY file:4355e6ec86fb1c1f3b1363634697345ce79aa750c4f822c87d554028ab0b4bd0 in . 9.32 MB

90COPY file:0a3308390f58b75b7bdadef203312970a36d63a1a0d2f6bd8b26ffad43a3d69e in . 135.6 KB

91COPY file:c4a14b10237ad07bb574bb2e4294fcba02f43e2e461ba24983773fb30e089ad3 in ./deeptrio/ 9.89 KB

92COPY file:dd9ea46f54527e2fca54b3db962ed85e2a48e36913ff15e4acb2a846cbdf2d68 in ./deeptrio/ 9.49 MB

93/bin/sh -c ./run-prereq.sh8.68 GB

94/bin/sh -c update-alternatives --install /usr/bin/python31.94 KB

95/bin/sh -c BASH_HEADER='#!/bin/bash' && 444 B

96WORKDIR /opt/models/deeptrio/wgs/child199 B

97ADD multi:523adb3a331c78dfa7a726d62c0d9db01a211531e04d46b11968023705ce3725 in ./ 359.68 KB

98WORKDIR /opt/models/deeptrio/wgs/child/variables221 B

99ADD multi:c8264ee253bdcffec37a1b44062c366c68ae28567926c4cb958a61f99199dcbd in ./ 78.3 MB

100/bin/sh -c chmod -R +r78.65 MB

101WORKDIR /opt/models/deeptrio/wgs/parent204 B

102ADD multi:bf55885a2dc12d5966f30613e83934d21fd9bfe70e4e4eb9294b97dbfafa4836 in ./ 359.68 KB

103WORKDIR /opt/models/deeptrio/wgs/parent/variables225 B

104ADD multi:76514eff67c53800e023c8e181ac21f5dba9cd4592f85e4e9473e98c5ae48a67 in ./ 77.39 MB

105/bin/sh -c chmod -R +r77.75 MB

106WORKDIR /opt/models/deeptrio/pacbio/child202 B

107ADD multi:3b4e3465e7bbf1ecff3f66bad467fb8410b2745b84aa2322f8e2c7c20fa61eb5 in ./ 359.72 KB

108WORKDIR /opt/models/deeptrio/pacbio/child/variables225 B

109ADD multi:202719555511d05a645df2e9d8a24f169d2cb222f6cc22cf65eeb5f4f3b2a411 in ./ 77.45 MB

110/bin/sh -c chmod -R +r77.8 MB

111WORKDIR /opt/models/deeptrio/pacbio/parent210 B

112ADD multi:461923a24377be54e68e4d8374f90d50b536ffaa6c57956ded7e7d1359177b3b in ./ 359.71 KB

113WORKDIR /opt/models/deeptrio/pacbio/parent/variables231 B

114ADD multi:273a3b7380df02951dd8af641c7708716648547e6e19ad5048e8ad767c614678 in ./ 77.23 MB

115/bin/sh -c chmod -R +r77.58 MB

116WORKDIR /opt/models/deeptrio/wes/child202 B

117ADD multi:4cd5937ea1105d46f09b454097a947803928577239c932190fd9075d61f9c589 in ./ 359.8 KB

118WORKDIR /opt/models/deeptrio/wes/child/variables223 B

119ADD multi:5a3460d96a8bd855c00b0b7a150bd37b6d685d642ec9c4f4dc662f5fa8f22aed in ./ 78.29 MB

120/bin/sh -c chmod -R +r78.64 MB

121WORKDIR /opt/models/deeptrio/wes/parent206 B

122ADD multi:d1d8039b7243a301e249a7c76dd07bb8ed3e3db9e256836906d403eb2b67ab27 in ./ 359.79 KB

123WORKDIR /opt/models/deeptrio/wes/parent/variables224 B

124ADD multi:ab1eb7bf706e28a971c893889e69be7221e1452dbd40dd78d8a5832790634d3e in ./ 77.44 MB

125/bin/sh -c chmod -R +r77.8 MB

126WORKDIR /opt/models/deeptrio/ont/child201 B

127ADD multi:18e8bd1653c412bb9692fa1e3bbc84de3f57d72de8951541b14957cced8c604f in ./ 359.83 KB

128WORKDIR /opt/models/deeptrio/ont/child/variables225 B

129ADD multi:3946b76dce6b7fd34b817541309ea2223c8b93b0529cfb5fdebee21010b2e06d in ./ 77.22 MB

130/bin/sh -c chmod -R +r77.57 MB

131WORKDIR /opt/models/deeptrio/ont/parent205 B

132ADD multi:7ea4dea37d9c33d5b2613893566f9d974bf562d0ae783fa7a0bc475e6e4719a3 in ./ 359.83 KB

133WORKDIR /opt/models/deeptrio/ont/parent/variables228 B

134ADD multi:75c310e145bcd56068a1fe0cd24a32085758bdfc3d0cd310580a27222e00c5ba in ./ 77.22 MB

135/bin/sh -c chmod -R +r77.57 MB

136WORKDIR /opt/smallmodels/deeptrio/wgs/child201 B

137ADD dad79b4008939e7b6bf618004365173658483b3481b5b8386f8714f8d8ad72cc in ./ 2.3 MB

138/bin/sh -c chmod -R +r2.3 MB

139WORKDIR /opt/smallmodels/deeptrio/wgs/parent206 B

140ADD 83ef7a5ee37b4ab22194cce2832881ae19f5316a7252e2287feb5404375fd406 in ./ 2.3 MB

141/bin/sh -c chmod -R +r2.3 MB

142WORKDIR /opt/smallmodels/deeptrio/pacbio/child205 B

143ADD 50999948fa8b060e6ebe5c55f4fbd962d84297ab8a01a555c8d7edfc36b9eac9 in ./ 2.59 MB

144/bin/sh -c chmod -R +r2.59 MB

145WORKDIR /opt/smallmodels/deeptrio/pacbio/parent212 B

146ADD fdc7d7b47a6c6c42ad206bed18b60b0d4344527dde626ddac55e98571e88ed92 in ./ 2.59 MB

147/bin/sh -c chmod -R +r2.59 MB

148WORKDIR /opt/smallmodels/deeptrio/ont/child203 B

149ADD 6a5702c04679cdad28c6691300167e625e72053ce0069e350707cc92d30273ec in ./ 2.59 MB

150/bin/sh -c chmod -R +r2.59 MB

151WORKDIR /opt/smallmodels/deeptrio/ont/parent209 B

152ADD b9ee87b11e6a540bb77a927b6de4b0a2620d81d3c628d2d5c18640916c5937af in ./ 2.59 MB

153/bin/sh -c chmod -R +r2.59 MB

154

ENV PATH=/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/conda/bin:/opt/conda/envs/bio/bin:/opt/deepvariant/bin/deeptrio:/opt/deepvariant/bin

0 B

155ENV TF_USE_LEGACY_KERAS=10 B

156/bin/sh -c apt-get -y update20.58 MB

157WORKDIR /opt/deepvariant0 B

158CMD ["/opt/deepvariant/bin/deeptrio/run_deeptrio" "--help"]0 B

Command

 ARG RELEASE