google/deepvariant:lr-giraffe-paper-gpu

Integration & delivery

Machine learning & AI

Data science

Manifest digest

sha256:4d84af73a0973a2bf2c626551501f407792fb3d0de393f4a70990bf53ae53bf3

OS/ARCH

linux/amd64

Compressed size

10.72 GB

Last pushed

about 1 year by pichuan

Type

Image

Manifest digest

sha256:4d84af73a0973a2bf2c626551501f407792fb3d0de393f4a70990bf53ae53bf3

Image Layers

Image Layers

1ARG RELEASE0 B

2ARG LAUNCHPAD_BUILD_ARCH0 B

3LABEL org.opencontainers.image.ref.name=ubuntu0 B

4LABEL org.opencontainers.image.version=22.040 B

5ADD file ... in / 29.03 MB

6CMD ["/bin/bash"]0 B

7ENV NVARCH=x86_640 B

8

ENV NVIDIA_REQUIRE_CUDA=cuda>=11.8 brand=tesla,driver>=470,driver<471 brand=unknown,driver>=470,driver<471 brand=nvidia,driver>=470,driver<471

0 B

9ENV NV_CUDA_CUDART_VERSION=11.8.89-10 B

10ENV NV_CUDA_COMPAT_PACKAGE=cuda-compat-11-80 B

11ARG TARGETARCH0 B

12LABEL maintainer=NVIDIA CORPORATION <[email protected]>0 B

13RUN |1 TARGETARCH=amd64 /bin/sh -c4.41 MB

14ENV CUDA_VERSION=11.8.00 B

15RUN |1 TARGETARCH=amd64 /bin/sh -c53.62 MB

16RUN |1 TARGETARCH=amd64 /bin/sh -c188 B

17ENV PATH=/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B

18ENV LD_LIBRARY_PATH=/usr/local/nvidia/lib:/usr/local/nvidia/lib640 B

19COPY NGC-DL-CONTAINER-LICENSE / # buildkit6.72 KB

20ENV NVIDIA_VISIBLE_DEVICES=all0 B

21ENV NVIDIA_DRIVER_CAPABILITIES=compute,utility0 B

22ENV NV_CUDA_LIB_VERSION=11.8.0-10 B

23ENV NV_NVTX_VERSION=11.8.86-10 B

24ENV NV_LIBNPP_VERSION=11.8.0.86-10 B

25ENV NV_LIBNPP_PACKAGE=libnpp-11-8=11.8.0.86-10 B

26ENV NV_LIBCUSPARSE_VERSION=11.7.5.86-10 B

27ENV NV_LIBCUBLAS_PACKAGE_NAME=libcublas-11-80 B

28ENV NV_LIBCUBLAS_VERSION=11.11.3.6-10 B

29ENV NV_LIBCUBLAS_PACKAGE=libcublas-11-8=11.11.3.6-10 B

30ENV NV_LIBNCCL_PACKAGE_NAME=libnccl20 B

31ENV NV_LIBNCCL_PACKAGE_VERSION=2.15.5-10 B

32ENV NCCL_VERSION=2.15.5-10 B

33ENV NV_LIBNCCL_PACKAGE=libnccl2=2.15.5-1+cuda11.80 B

34ARG TARGETARCH0 B

35LABEL maintainer=NVIDIA CORPORATION <[email protected]>0 B

36RUN |1 TARGETARCH=amd64 /bin/sh -c1.28 GB

37RUN |1 TARGETARCH=amd64 /bin/sh -c62.2 KB

38COPY entrypoint.d/ /opt/nvidia/entrypoint.d/ # buildkit1.65 KB

39COPY nvidia_entrypoint.sh /opt/nvidia/ # buildkit1.49 KB

40ENV NVIDIA_PRODUCT_NAME=CUDA0 B

41ENTRYPOINT ["/opt/nvidia/nvidia_entrypoint.sh"]0 B

42ENV NV_CUDA_LIB_VERSION=11.8.0-10 B

43ENV NV_CUDA_CUDART_DEV_VERSION=11.8.89-10 B

44ENV NV_NVML_DEV_VERSION=11.8.86-10 B

45ENV NV_LIBCUSPARSE_DEV_VERSION=11.7.5.86-10 B

46ENV NV_LIBNPP_DEV_VERSION=11.8.0.86-10 B

47ENV NV_LIBNPP_DEV_PACKAGE=libnpp-dev-11-8=11.8.0.86-10 B

48ENV NV_LIBCUBLAS_DEV_VERSION=11.11.3.6-10 B

49ENV NV_LIBCUBLAS_DEV_PACKAGE_NAME=libcublas-dev-11-80 B

50ENV NV_LIBCUBLAS_DEV_PACKAGE=libcublas-dev-11-8=11.11.3.6-10 B

51ENV NV_CUDA_NSIGHT_COMPUTE_VERSION=11.8.0-10 B

52ENV NV_CUDA_NSIGHT_COMPUTE_DEV_PACKAGE=cuda-nsight-compute-11-8=11.8.0-10 B

53ENV NV_NVPROF_VERSION=11.8.87-10 B

54ENV NV_NVPROF_DEV_PACKAGE=cuda-nvprof-11-8=11.8.87-10 B

55ENV NV_LIBNCCL_DEV_PACKAGE_NAME=libnccl-dev0 B

56ENV NV_LIBNCCL_DEV_PACKAGE_VERSION=2.15.5-10 B

57ENV NCCL_VERSION=2.15.5-10 B

58ENV NV_LIBNCCL_DEV_PACKAGE=libnccl-dev=2.15.5-1+cuda11.80 B

59ARG TARGETARCH0 B

60LABEL maintainer=NVIDIA CORPORATION <[email protected]>0 B

61RUN |1 TARGETARCH=amd64 /bin/sh -c2.29 GB

62RUN |1 TARGETARCH=amd64 /bin/sh -c86.16 KB

63ENV LIBRARY_PATH=/usr/local/cuda/lib64/stubs0 B

64ENV NV_CUDNN_VERSION=8.9.6.500 B

65ENV NV_CUDNN_PACKAGE_NAME=libcudnn80 B

66ENV NV_CUDNN_PACKAGE=libcudnn8=8.9.6.50-1+cuda11.80 B

67ENV NV_CUDNN_PACKAGE_DEV=libcudnn8-dev=8.9.6.50-1+cuda11.80 B

68ARG TARGETARCH0 B

69LABEL maintainer=NVIDIA CORPORATION <[email protected]>0 B

70LABEL com.nvidia.cudnn.version=8.9.6.500 B

71RUN |1 TARGETARCH=amd64 /bin/sh -c1.34 GB

72ARG DV_GPU_BUILD0 B

73ARG VERSION0 B

74ARG PYTHON_VERSION0 B

75ARG TF_ENABLE_ONEDNN_OPTS0 B

76ENV DV_GPU_BUILD=10 B

77ENV VERSION=1.9.00 B

78ENV PYTHON_VERSION=3.100 B

79ENV TF_ENABLE_ONEDNN_OPTS=10 B

80/bin/sh -c echo "Acquire::http::proxy \"$http_proxy\";\n"187 B

81WORKDIR /opt/0 B

82COPY file:1f872c4e751a2dd52ec6556c2202ff820f3cb61f5c1cba92e0a6103ecdf6d842 in . 21.98 KB

83WORKDIR /opt/deepvariant/bin/166 B

84COPY dir:125d7eca4bb6de00ab1dacf3f96d0d6e1255e1a72175221e1537a6321662af6e in /opt/conda 155.28 MB

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99COPY file:508434179b9e068efd6503d8d0ebef277a4227822cbabdbc462b7871a73dce36 in . 7.87 KB

100/bin/sh -c ./run-prereq.sh4.54 GB

101/bin/sh -c update-alternatives --install /usr/bin/python31.93 KB

102/bin/sh -c BASH_HEADER='#!/bin/bash' && 591 B

103WORKDIR /opt/models/wgs162 B

104ADD 3a4569ae1c1f00f342aa121d6dec7ade89db41efcbd86c22e9538938a587d54d in . 274 B

105ADD e7ecd27da8d1dd36013d8e3ba9a090e8f7ed6dd7c4fd034b83b501ee99d177d0 in . 341.75 KB

106ADD dac61b702bda4a221e189b016735773948efdfa5c9b109bb62a86f4c8bd5de3f in . 247 B

107WORKDIR /opt/models/wgs/variables182 B

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109ADD 040d24d619f251ee5dbe5b5f258e0ab86decf98c3fb6743b48e2bfd5a9f86cbb in . 5.94 KB

110/bin/sh -c chmod -R +r77.4 MB

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117ADD cd54471993da5b582962d12ea17e43ee25e59ef360c43e38e31eb0e4429641ff in . 5.95 KB

118/bin/sh -c chmod -R +r77.51 MB

119WORKDIR /opt/models/pacbio171 B

120ADD 48f97687db11c400702f53dd11f2eb53ac2f8979b8daefec691ad9abcd96b0ee in . 284 B

121ADD f4a3bbeb41bf9aa6de2f533235ca7ba5949980f446aee50bcc2878f8b619455f in . 341.68 KB

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126/bin/sh -c chmod -R +r75.81 MB

127WORKDIR /opt/models/hybrid_pacbio_illumina184 B

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134/bin/sh -c chmod -R +r75.87 MB

135WORKDIR /opt/models/ont_r104172 B

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150/bin/sh -c chmod -R +r77.96 MB

151WORKDIR /opt/smallmodels/wgs166 B

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155WORKDIR /opt/smallmodels/wgs/variables188 B

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158/bin/sh -c chmod -R +r2.22 MB

159WORKDIR /opt/smallmodels/pacbio172 B

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163WORKDIR /opt/smallmodels/pacbio/variables194 B

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166/bin/sh -c chmod -R +r2.3 MB

167WORKDIR /opt/smallmodels/ont_r104174 B

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171WORKDIR /opt/smallmodels/ont_r104/variables196 B

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174/bin/sh -c chmod -R +r2.32 MB

175

ENV PATH=/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/conda/bin:/opt/conda/envs/bio/bin:/opt/deepvariant/bin

0 B

176/bin/sh -c apt-get -y update20.55 MB

177WORKDIR /opt/deepvariant0 B

178CMD ["/opt/deepvariant/bin/run_deepvariant" "--help"]0 B

Command

 ARG RELEASE