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immcantation/lab:training-4.3.0

Machine learning & AI
Data science
Manifest digest

sha256:52a49600e4150f90a691f85d2ac2dee0185df0e930dc8be9859eaac32340b6cf

OS/ARCH

linux/amd64

Compressed size

1.53 GB

Last pushed

almost 5 years by immcantation

Type

Image

Manifest digest

sha256:52a49600e4150f90a691f85d2ac2dee0185df0e930dc8be9859eaac32340b6cf

Image Layers

Image Layers

1LABEL maintainer=Clement Verna <[email protected]>0 B
2ENV DISTTAG=f33container FGC=f33 FBR=f330 B
3ADD file ... in / 59.06 MB
4CMD ["/bin/bash"]0 B
5LABEL maintainer=Jason Anthony Vander Heiden0 B
6VOLUME [/data]0 B
7VOLUME [/scratch]0 B
8VOLUME [/software]0 B
9VOLUME [/oasis]0 B
10COPY tools/versions.py /usr/local/bin/versions # buildkit3.04 KB
11COPY tools/builds.py /usr/local/bin/builds # buildkit1.42 KB
12COPY tools/pipelines.py /usr/local/bin/pipelines # buildkit1.26 KB
13COPY tools/rinstall.R /usr/local/bin/rinstall # buildkit676 B
14RUN /bin/sh -c (cd /etc/yum.repos.d;1000 B
15RUN /bin/sh -c dnf -y672.54 MB
16ENV LD_LIBRARY_PATH=/usr/lib64/R/lib:/usr/lib64/atlas0 B
17ARG R_REPO=http://lib.stat.cmu.edu/R/CRAN/0 B
18ARG R_DEPS=c('Rcpp', 0 B
19ARG R_BIOC_DEPS=c('Biostrings', 0 B
20RUN |3 R_REPO=http://lib.stat.cmu.edu/R/CRAN/ R_DEPS=c('Rcpp', 143.16 MB
21LABEL maintainer=Jason Anthony Vander Heiden0 B
22COPY Version.yaml /Version.yaml # buildkit326 B
23COPY Pipeline.yaml /Pipeline.yaml # buildkit407 B
24RUN /bin/sh -c builds write134 B
25RUN /bin/sh -c PACKAGE="immcantation" 26.95 KB
26RUN /bin/sh -c MUSCLE=$(versions get578.74 KB
27RUN /bin/sh -c VSEARCH=$(versions get650.75 KB
28RUN /bin/sh -c CDHIT=$(versions get432.08 KB
29RUN /bin/sh -c BLAST=$(versions get239.38 MB
30RUN /bin/sh -c IGBLAST=$(versions get52.68 MB
31RUN /bin/sh -c PHYLIP=$(versions get4.32 MB
32RUN /bin/sh -c wget -q5.25 MB
33RUN /bin/sh -c AIRR_PY=$(versions get10.69 MB
34RUN /bin/sh -c PACKAGE="presto" 127.48 KB
35RUN /bin/sh -c PACKAGE="changeo" 176.85 KB
36RUN /bin/sh -c PACKAGE="alakazam" 24.05 MB
37RUN /bin/sh -c PACKAGE="shazam" 3.75 MB
38RUN /bin/sh -c PACKAGE="tigger" 5.42 MB
39RUN /bin/sh -c PACKAGE="scoper" 3.6 MB
40RUN /bin/sh -c PACKAGE="dowser" 5.67 MB
41RUN /bin/sh -c PACKAGE="prestor" 1.74 MB
42RUN /bin/sh -c IGPHYML=$(versions get7.12 MB
43RUN /bin/sh -c PACKAGE="rdi" 1.39 MB
44RUN /bin/sh -c RABHIT=$(versions get18.25 MB
45RUN /bin/sh -c fetch_imgtdb.sh -o1.1 MB
46ENV PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/local/share/igphyml/src0 B
47RUN /bin/sh -c useradd magus2.61 KB
48CMD ["/bin/sh" "-c" "echo -e0 B
49LABEL maintainer=Susanna Marquez [[email protected]] description=Immcantation0 B
50USER root0 B
51RUN /bin/sh -c sudo sed448.53 KB
52ENV NB_USER=magus0 B
53ENV NB_UID=10000 B
54ENV HOME=/home/magus0 B
55RUN /bin/sh -c mkdir ${HOME}/notebooks186 B
56VOLUME [/home/magus/results]0 B
57RUN /bin/sh -c PACKAGE="immcantation" 2.1 MB
58RUN /bin/sh -c pip3 install71.27 MB
59RUN /bin/sh -c Rscript -e225 B
60ARG R_DEPS=c('uuid', 0 B
61RUN |1 R_DEPS=c('uuid', 93.46 MB
62WORKDIR /home/magus/notebooks32 B
63EXPOSE map[8888/tcp:{}]0 B
64COPY start-notebook.sh /usr/local/bin/ # buildkit234 B
65RUN |1 R_DEPS=c('uuid', 95.55 MB
66USER magus0 B
67RUN |1 R_DEPS=c('uuid', 5.16 MB
68RUN |1 R_DEPS=c('uuid', 18.7 MB
69RUN |1 R_DEPS=c('uuid', 19.7 MB
70CMD ["start-notebook.sh"]0 B

Command

 LABEL maintainer=Clement Verna <[email protected]>