pennlinc/qsiprep-base:latest

Manifest digest

sha256:093b32f06e0699e6e6decba9ea0df5232d7a36d677d325de4f85c8aa18f4b8cc

OS/ARCH

linux/amd64

Compressed size

5.98 GB

Last pushed

11 days by matthewcieslak

Type

Image

Manifest digest

sha256:093b32f06e0699e6e6decba9ea0df5232d7a36d677d325de4f85c8aa18f4b8cc

Image Layers

Image Layers

1ARG RELEASE0 B

2ARG LAUNCHPAD_BUILD_ARCH0 B

3LABEL org.opencontainers.image.ref.name=ubuntu0 B

4LABEL org.opencontainers.image.version=22.040 B

5ADD file ... in / 28.17 MB

6CMD ["/bin/bash"]0 B

7ENV NVARCH=x86_640 B

8

ENV NVIDIA_REQUIRE_CUDA=cuda>=12.2 brand=tesla,driver>=470,driver<471 brand=unknown,driver>=470,driver<471 brand=nvidia,driver>=470,driver<471

0 B

9ENV NV_CUDA_CUDART_VERSION=12.2.140-10 B

10ENV NV_CUDA_COMPAT_PACKAGE=cuda-compat-12-20 B

11ARG TARGETARCH0 B

12LABEL maintainer=NVIDIA CORPORATION <[email protected]>0 B

13RUN |1 TARGETARCH=amd64 /bin/sh -c4.41 MB

14ENV CUDA_VERSION=12.2.20 B

15RUN |1 TARGETARCH=amd64 /bin/sh -c53.48 MB

16RUN |1 TARGETARCH=amd64 /bin/sh -c184 B

17ENV PATH=/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B

18ENV LD_LIBRARY_PATH=/usr/local/nvidia/lib:/usr/local/nvidia/lib640 B

19COPY NGC-DL-CONTAINER-LICENSE / # buildkit6.72 KB

20ENV NVIDIA_VISIBLE_DEVICES=all0 B

21ENV NVIDIA_DRIVER_CAPABILITIES=compute,utility0 B

22ENV NV_CUDA_LIB_VERSION=12.2.2-10 B

23ENV NV_NVTX_VERSION=12.2.140-10 B

24ENV NV_LIBNPP_VERSION=12.2.1.4-10 B

25ENV NV_LIBNPP_PACKAGE=libnpp-12-2=12.2.1.4-10 B

26ENV NV_LIBCUSPARSE_VERSION=12.1.2.141-10 B

27ENV NV_LIBCUBLAS_PACKAGE_NAME=libcublas-12-20 B

28ENV NV_LIBCUBLAS_VERSION=12.2.5.6-10 B

29ENV NV_LIBCUBLAS_PACKAGE=libcublas-12-2=12.2.5.6-10 B

30ENV NV_LIBNCCL_PACKAGE_NAME=libnccl20 B

31ENV NV_LIBNCCL_PACKAGE_VERSION=2.19.3-10 B

32ENV NCCL_VERSION=2.19.3-10 B

33ENV NV_LIBNCCL_PACKAGE=libnccl2=2.19.3-1+cuda12.20 B

34ARG TARGETARCH0 B

35LABEL maintainer=NVIDIA CORPORATION <[email protected]>0 B

36RUN |1 TARGETARCH=amd64 /bin/sh -c1.18 GB

37RUN |1 TARGETARCH=amd64 /bin/sh -c62.34 KB

38COPY entrypoint.d/ /opt/nvidia/entrypoint.d/ # buildkit1.65 KB

39COPY nvidia_entrypoint.sh /opt/nvidia/ # buildkit1.49 KB

40ENV NVIDIA_PRODUCT_NAME=CUDA0 B

41ENTRYPOINT ["/opt/nvidia/nvidia_entrypoint.sh"]0 B

42ENV DSI_STUDIO_DEPS=libqt5charts5 libqt5opengl5 libqt5svg5 libqt5gui50 B

43COPY /opt/mrtrix3-latest /opt/mrtrix3-stable # buildkit41.86 MB

44COPY /opt/mrtrix3 /opt/mrtrix3-dev # buildkit19.65 MB

45COPY /opt/3Tissue /opt/3Tissue # buildkit37.21 MB

46

ENV MRTRIX3_STABLE_HOME=/opt/mrtrix3-stable MRTRIX3_DEV_HOME=/opt/mrtrix3-dev MRTRIX3_STABLE_VERSION=3.0.4 MRTRIX3_DEV_VERSION=3.0.8-2071-gb98b54e9

0 B

47COPY /opt/freesurfer /opt/freesurfer # buildkit270.12 MB

48COPY /opt/freesurfer-synthseg /opt/freesurfer-synthseg # buildkit387.74 MB

49COPY /opt/freesurfer-torch /opt/freesurfer-torch # buildkit3 GB

50ENV OS=Linux FS_OVERRIDE=0 FIX_VERTEX_AREA= FSF_OUTPUT_FORMAT=nii.gz0 B

51

ENV SUBJECTS_DIR=/opt/freesurfer/subjects FUNCTIONALS_DIR=/opt/freesurfer/sessions MNI_DIR=/opt/freesurfer/mni LOCAL_DIR=/opt/freesurfer/local

0 B

52

ENV PERL5LIB=/opt/freesurfer/mni/lib/perl5/5.8.5 MNI_PERL5LIB=/opt/freesurfer/mni/lib/perl5/5.8.5 PATH=/opt/freesurfer/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/opt/dsi-studio:/opt/dsi-studio/dsi_studio_64:/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/mrtrix3-stable/bin:/opt/mrtrix3-dev/bin:/opt/3Tissue/bin FREESURFER_DEPS=bc

0 B

53RUN /bin/sh -c chmod a+rx31.65 KB

54COPY /opt/synb0 /opt/synb0 # buildkit366.51 MB

55ENV SYNB0_ATLASES=/opt/synb0/atlases0 B

56COPY /opt/afni/install/libf2c.so /opt/afni/install/libmri.so /opt/afni/install/libSUMA.so /usr/local/lib/7.02 MB

57COPY /opt/afni/install/3dAutobox /opt/afni/install/3dAutomask /opt/afni/install/3dFWHMx /opt/afni/install/3dQwarp2.64 MB

58

ENV PATH=/opt/freesurfer/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/opt/dsi-studio:/opt/dsi-studio/dsi_studio_64:/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/mrtrix3-stable/bin:/opt/mrtrix3-dev/bin:/opt/3Tissue/bin:/usr/local/bin AFNI_INSTALLDIR=/usr/local/bin AFNI_IMSAVE_WARNINGS=NO

0 B

59COPY /src/TORTOISEV4/bin /src/TORTOISEV4/bin # buildkit45.89 MB

60COPY /src/TORTOISEV4/settings /src/TORTOISEV4/settings # buildkit3.93 KB

61COPY /src/TORTOISEV4/bin/*cuda /src/TORTOISEV4/bin/ # buildkit8.01 MB

62

ENV PATH=/opt/freesurfer/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/opt/dsi-studio:/opt/dsi-studio/dsi_studio_64:/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/mrtrix3-stable/bin:/opt/mrtrix3-dev/bin:/opt/3Tissue/bin:/usr/local/bin:/src/TORTOISEV4/bin TORTOISE_DEPS=libfftw3-3

0 B

63COPY /opt/trxscan /opt/trxscan # buildkit177.22 MB

64

ENV PATH=/opt/freesurfer/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/opt/dsi-studio:/opt/dsi-studio/dsi_studio_64:/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/mrtrix3-stable/bin:/opt/mrtrix3-dev/bin:/opt/3Tissue/bin:/usr/local/bin:/src/TORTOISEV4/bin:/opt/trxscan/bin

0 B

65COPY /opt/niimath /opt/niimath # buildkit602.58 KB

66

ENV PATH=/opt/freesurfer/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/opt/dsi-studio:/opt/dsi-studio/dsi_studio_64:/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/mrtrix3-stable/bin:/opt/mrtrix3-dev/bin:/opt/3Tissue/bin:/usr/local/bin:/src/TORTOISEV4/bin:/opt/trxscan/bin:/opt/niimath/bin

0 B

67RUN /bin/sh -c useradd -m4.25 KB

68WORKDIR /home/qsiprep32 B

69ENV HOME=/home/qsiprep MKL_NUM_THREADS=1 OMP_NUM_THREADS=1 MRTRIX_NTHREADS=10 B

70ENV FSLOUTPUTTYPE=NIFTI_GZ FSLMULTIFILEQUIT=TRUE FSLLOCKDIR= FSLMACHINELIST=0 B

71RUN /bin/sh -c apt-get update139.31 MB

72RUN /bin/sh -c echo "Downloading54.6 MB

73

ENV C3DPATH=/opt/convert3d-nightly PATH=/opt/convert3d-nightly/bin:/opt/freesurfer/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/opt/dsi-studio:/opt/dsi-studio/dsi_studio_64:/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/mrtrix3-stable/bin:/opt/mrtrix3-dev/bin:/opt/3Tissue/bin:/usr/local/bin:/src/TORTOISEV4/bin:/opt/trxscan/bin:/opt/niimath/bin

0 B

74COPY /opt/dsi-studio /opt/dsi-studio # buildkit199.23 MB

75WORKDIR /opt/art110 B

76

ENV PATH=/opt/art/bin:/opt/convert3d-nightly/bin:/opt/freesurfer/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/opt/dsi-studio:/opt/dsi-studio/dsi_studio_64:/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/mrtrix3-stable/bin:/opt/mrtrix3-dev/bin:/opt/3Tissue/bin:/usr/local/bin:/src/TORTOISEV4/bin:/opt/trxscan/bin:/opt/niimath/bin

0 B

77RUN /bin/sh -c cd /opt/art1.27 MB

78ENV HOME=/home/qsiprep MKL_NUM_THREADS=1 OMP_NUM_THREADS=1 MRTRIX_NTHREADS=10 B

79WORKDIR /root/32 B

80RUN /bin/sh -c if [2.23 MB

81RUN /bin/sh -c mkdir -p203 B

82LABEL org.label-schema.name=qsiprep-base org.label-schema.description=QSIPrep base image0 B

Command

 ARG RELEASE