staphb/clair3:1.0.9

Index digest

sha256:67ac060fde578778742763c09127cf0f4e5d91a641ec3a2fe722dd86fdaf9763

OS/ARCH

linux/amd64

Compressed size

690.17 MB

Last pushed

about 2 years by staphbadmin

Type

Image

Manifest digest

sha256:c4a48a84d8a3609006966bdd7038b30ca1aa65d19ce2d2e40ba667751ee07fbd

Image Layers

Image Layers

1ADD file ... in / 27.8 MB

2CMD ["bash"]0 B

3ENV LANG=C.UTF-8 LC_ALL=C.UTF-80 B

4ENV ENV_NAME=base0 B

5ENV MAMBA_ROOT_PREFIX=/opt/conda0 B

6ENV MAMBA_EXE=/bin/micromamba0 B

7COPY /etc/ssl/certs/ca-certificates.crt /etc/ssl/certs/ca-certificates.crt # buildkit119.8 KB

8COPY /tmp/bin/micromamba /bin/micromamba # buildkit5.78 MB

9RUN /bin/sh -c { grep32 B

10ARG MAMBA_USER=mambauser0 B

11ARG MAMBA_USER_ID=574390 B

12ARG MAMBA_USER_GID=574390 B

13ENV MAMBA_USER=mambauser0 B

14ENV MAMBA_USER_ID=574390 B

15ENV MAMBA_USER_GID=574390 B

16COPY _dockerfile_initialize_user_accounts.sh /usr/local/bin/_dockerfile_initialize_user_accounts.sh # buildkit528 B

17COPY _dockerfile_setup_root_prefix.sh /usr/local/bin/_dockerfile_setup_root_prefix.sh # buildkit287 B

18RUN |3 MAMBA_USER=mambauser MAMBA_USER_ID=57439 MAMBA_USER_GID=574393.69 KB

19USER mambauser0 B

20WORKDIR /tmp32 B

21COPY _apptainer_shell.sh /usr/local/bin/_apptainer_shell.sh # buildkit218 B

22COPY _entrypoint.sh /usr/local/bin/_entrypoint.sh # buildkit687 B

23COPY _activate_current_env.sh /usr/local/bin/_activate_current_env.sh # buildkit650 B

24ENTRYPOINT ["/usr/local/bin/_entrypoint.sh"]0 B

25CMD ["/bin/bash"]0 B

26COPY _dockerfile_shell.sh /usr/local/bin/_dockerfile_shell.sh # buildkit348 B

27SHELL [/usr/local/bin/_dockerfile_shell.sh]0 B

28ARG CLAIR3_VER=1.0.90 B

29USER root0 B

30WORKDIR /0 B

31LABEL base.image=mambaorg/micromamba:1.5.80 B

32LABEL dockerfile.version=10 B

33LABEL software=CLAIR30 B

34LABEL software.version=1.0.90 B

35LABEL description=Clair3 is a germline0 B

36LABEL website=https://github.com/HKU-BAL/Clair30 B

37LABEL license=https://github.com/HKU-BAL/Clair3/blob/main/LICENSE.md0 B

38LABEL maintainer=Kutluhan Incekara0 B

39LABEL [email protected]0 B

40RUN |1 CLAIR3_VER=1.0.9 /usr/local/bin/_dockerfile_shell.sh apt-get14.84 MB

41RUN |1 CLAIR3_VER=1.0.9 /usr/local/bin/_dockerfile_shell.sh micromamba391.4 MB

42ENV PATH=/opt/conda/bin/:/clair3:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin LC_ALL=C.UTF-80 B

43RUN |1 CLAIR3_VER=1.0.9 /usr/local/bin/_dockerfile_shell.sh pypy35.22 MB

44COPY /clair3 /clair3 # buildkit244.99 MB

45CMD ["/usr/local/bin/_dockerfile_shell.sh" "run_clair3.sh"]0 B

46WORKDIR /data94 B

Command

ADD file:5f9954090af042b377ea0d1d184faa64d2e9d4c946b6c3898d52aff47e764056 in /