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staphb/clair3:2.0.0

Index digest

sha256:2c3e1352a399fc4bb7475752d6310a00c749b92ecdd352aede3bd84f0e23af81

OS/ARCH

linux/amd64

Compressed size

876.04 MB

Last pushed

4 months by staphbadmin

Type

Image

Manifest digest

sha256:74e26bea83988835cf6c7052c16645d90d1d711ac11188c0c5506834fd80e4a4

Image Layers

Image Layers

1ARG RELEASE0 B
2ARG LAUNCHPAD_BUILD_ARCH0 B
3LABEL org.opencontainers.image.ref.name=ubuntu0 B
4LABEL org.opencontainers.image.version=24.040 B
5ADD file ... in / 28.35 MB
6CMD ["/bin/bash"]0 B
7ARG CERT_SOURCE=/etc/ssl/certs/ca-certificates.crt0 B
8ARG MAMBA_USER=mambauser0 B
9ARG MAMBA_USER_ID=574390 B
10ARG MAMBA_USER_GID=574390 B
11ENV MAMBA_USER=mambauser0 B
12ENV MAMBA_USER_ID=574390 B
13ENV MAMBA_USER_GID=574390 B
14ENV LANG=C.UTF-8 LC_ALL=C.UTF-80 B
15ENV ENV_NAME=base0 B
16ENV MAMBA_ROOT_PREFIX=/opt/conda0 B
17ENV MAMBA_EXE=/bin/micromamba0 B
18ENV CONDA_OVERRIDE_CUDA=0 B
19COPY /bin/micromamba /bin/micromamba # buildkit7.03 MB
20COPY /etc/ssl/certs/ca-certificates.crt /etc/ssl/certs/ca-certificates.crt # buildkit123.59 KB
21COPY _dockerfile_initialize_user_accounts.sh /usr/local/bin/_dockerfile_initialize_user_accounts.sh # buildkit552 B
22COPY _dockerfile_setup_root_prefix.sh /usr/local/bin/_dockerfile_setup_root_prefix.sh # buildkit284 B
23RUN |4 CERT_SOURCE=/etc/ssl/certs/ca-certificates.crt MAMBA_USER=mambauser MAMBA_USER_ID=574393.98 KB
24USER mambauser0 B
25WORKDIR /tmp32 B
26COPY _apptainer_shell.sh /usr/local/bin/_apptainer_shell.sh # buildkit216 B
27COPY _entrypoint.sh /usr/local/bin/_entrypoint.sh # buildkit704 B
28COPY _activate_current_env.sh /usr/local/bin/_activate_current_env.sh # buildkit657 B
29ENTRYPOINT ["/usr/local/bin/_entrypoint.sh"]0 B
30CMD ["/bin/bash"]0 B
31COPY _dockerfile_shell.sh /usr/local/bin/_dockerfile_shell.sh # buildkit348 B
32SHELL [/usr/local/bin/_dockerfile_shell.sh]0 B
33ARG CLAIR3_VER=2.0.00 B
34USER root0 B
35WORKDIR /opt/bin108 B
36LABEL base.image=mambaorg/micromamba:2.5.0-ubuntu24.040 B
37LABEL dockerfile.version=10 B
38LABEL software=CLAIR30 B
39LABEL software.version=2.0.00 B
40LABEL description=A deep learning-based germline0 B
41LABEL website=https://github.com/HKU-BAL/Clair30 B
42LABEL license=https://github.com/HKU-BAL/Clair3/blob/master/LICENSE.md0 B
43LABEL maintainer=Kutluhan Incekara0 B
44LABEL [email protected]0 B
45LABEL maintainer2=Raheel Ahmed0 B
46LABEL [email protected]0 B
47RUN |1 CLAIR3_VER=2.0.0 /usr/local/bin/_dockerfile_shell.sh apt-get3.3 MB
48RUN |1 CLAIR3_VER=2.0.0 /usr/local/bin/_dockerfile_shell.sh micromamba207.75 MB
49ENV CONDA_PREFIX=/opt/conda0 B
50ENV PATH=/opt/conda/bin:/opt/conda/bin:/opt/bin:/clair3:/clair3/models:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin LC_ALL=C.UTF-8 LANG=C.UTF-80 B
51COPY /opt/bin /opt/bin # buildkit58.27 MB
52COPY /opt/models /opt/models # buildkit301.29 MB
53RUN |1 CLAIR3_VER=2.0.0 /usr/local/bin/_dockerfile_shell.sh pip269.91 MB
54RUN |1 CLAIR3_VER=2.0.0 /usr/local/bin/_dockerfile_shell.sh ln201 B
55RUN |1 CLAIR3_VER=2.0.0 /usr/local/bin/_dockerfile_shell.sh ln100 B
56RUN |1 CLAIR3_VER=2.0.0 /usr/local/bin/_dockerfile_shell.sh mkdir94 B
57WORKDIR /data32 B

Command

 ARG RELEASE