uwgac/topmed-devel:2.7.3

Languages & frameworks

Data science

Manifest digest

sha256:e084304ea264165255ec1978d9df409a7cb364bcb704f901c8d13abda6342415

OS/ARCH

linux/amd64

Compressed size

3.27 GB

Last pushed

over 6 years by rollinroy

Type

Image

Manifest digest

sha256:e084304ea264165255ec1978d9df409a7cb364bcb704f901c8d13abda6342415

Image Layers

Image Layers

1ADD file ... in / 25.45 MB

2/bin/sh -c [ -z "$(apt-get34.53 KB

3/bin/sh -c set -xe &&854 B

4/bin/sh -c mkdir -p /run/systemd163 B

5CMD ["/bin/bash"]0 B

6ARG mkl_version=2018.1.1630 B

7ENV TZ=America/Los_Angeles0 B

8|1 mkl_version=2019.2.187 /bin/sh -c ln202 B

9|1 mkl_version=2019.2.187 /bin/sh -c apt-get729.88 MB

10|1 mkl_version=2019.2.187 /bin/sh -c apt-get1.33 MB

11|1 mkl_version=2019.2.187 /bin/sh -c echo541 B

12|1 mkl_version=2019.2.187 /bin/sh -c apt-get11.81 MB

13|1 mkl_version=2019.2.187 /bin/sh -c mkdir159 B

14ADD file ... in /usr/local/src/mkl/ 840.25 MB

15|1 mkl_version=2019.2.187 /bin/sh -c echo828.02 MB

16|1 mkl_version=2019.2.187 /bin/sh -c apt-get140.35 KB

17|1 mkl_version=2019.2.187 /bin/sh -c apt-get22.46 MB

18|1 mkl_version=2019.2.187 /bin/sh -c update-alternatives4.97 KB

19|1 mkl_version=2019.2.187 /bin/sh -c update-alternatives4.99 KB

20/bin/sh -c apt-get update &&1.17 MB

21/bin/sh -c apt-get update &&1.34 MB

22ARG APP_BSRC=/usr/local/src0 B

23ARG ST_SRC=/usr/local/src/samtools0 B

24ARG APP_BBIN=/usr/local/bin0 B

25ARG ST_INSTALL=/usr/local0 B

26ARG THE_APP=htslib0 B

27|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools26.2 MB

28ARG THE_APP=samtools0 B

29|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools25.26 MB

30ARG THE_APP=bcftools0 B

31|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools18.32 MB

32|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools596.39 KB

33|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools0 B

34|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools195 B

35|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools18.48 MB

36|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools354.93 KB

37|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools9.56 MB

38|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools163.8 KB

39|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools829.7 KB

40|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools2.09 MB

41|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools488.95 KB

42|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools1.29 MB

43|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools1.09 MB

44|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools16.69 MB

45|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools1.62 MB

46ARG ra_version0 B

47ENV R_VERSION=3.6.10 B

48|1 ra_version=3.6.1 /bin/sh -c mkdir58.06 MB

49|1 ra_version=3.6.1 /bin/sh -c mkdir149 B

50|1 ra_version=3.6.1 /bin/sh -c echo116.89 MB

51|1 ra_version=3.6.1 /bin/sh -c ln215 B

52ARG p_version=3.6.1p0 B

53|2 p_version=3.6.1p ra_version=3.6.1 /bin/sh -c116.91 MB

54|2 p_version=3.6.1p ra_version=3.6.1 /bin/sh -c213 B

55|2 p_version=3.6.1p ra_version=3.6.1 /bin/sh -c188 B

56|2 p_version=3.6.1p ra_version=3.6.1 /bin/sh -c18.26 KB

57ADD file ... in /usr/local/bin/ 611 B

58|2 p_version=3.6.1p ra_version=3.6.1 /bin/sh -c202 B

59ARG git_branch0 B

60ENV ANALYSIS_PIPELINE_BRANCH=devel0 B

61|1 git_branch=devel /bin/sh -c echo0 B

62|1 git_branch=devel /bin/sh -c mkdir92.29 MB

63|1 git_branch=devel /bin/sh -c ln180 B

64|1 git_branch=devel /bin/sh -c R_switch201 B

65|1 git_branch=devel /bin/sh -c Rscript63 MB

66|1 git_branch=devel /bin/sh -c cd126.37 MB

67|1 git_branch=devel /bin/sh -c R_switch203 B

68|1 git_branch=devel /bin/sh -c Rscript63 MB

69|1 git_branch=devel /bin/sh -c cd126.38 MB

70ARG git_branch0 B

71ENV ANALYSIS_PIPELINE_BRANCH=devel0 B

72|1 git_branch=devel /bin/sh -c echo0 B

73ENV AP_DIR=/usr/local/src/topmed_devel0 B

74|1 git_branch=devel /bin/sh -c if13.29 KB

75ENV AP_LINK=/usr/local/analysis_pipeline0 B

76|1 git_branch=devel /bin/sh -c if169 B

77|1 git_branch=devel /bin/sh -c ln181 B

78ADD file ... in /usr/local/bin 3.01 KB

79ADD file ... in /usr/local/bin 3 KB

80|1 git_branch=devel /bin/sh -c groupadd5.64 KB

81|1 git_branch=devel /bin/sh -c mkdir269 B

82|1 git_branch=devel /bin/sh -c sed1.87 KB

83|1 git_branch=devel /bin/sh -c sed1.88 KB

84|1 git_branch=devel /bin/sh -c sed1.88 KB

85ADD file ... in /usr/local/bin 247 B

86USER topmed:topmed0 B

87ENTRYPOINT ["/usr/local/bin/umask.sh"]0 B

Command

ADD file:53f100793e6c0adfca99977a42bb65cb7971c26e4d6e4499d1c30a1f51f06854 in /