uwgac/topmed-devel:roy

Languages & frameworks

Data science

Manifest digest

sha256:d06ea9d9305595ebdf7f8d08edab66a2942770fe40b8ab60c5fd32c98ae8887d

OS/ARCH

linux/amd64

Compressed size

3.17 GB

Last pushed

about 6 years by rollinroy

Type

Image

Manifest digest

sha256:d06ea9d9305595ebdf7f8d08edab66a2942770fe40b8ab60c5fd32c98ae8887d

Image Layers

Image Layers

1ADD file ... in / 25.45 MB

2/bin/sh -c [ -z "$(apt-get34.54 KB

3/bin/sh -c set -xe &&844 B

4/bin/sh -c mkdir -p /run/systemd163 B

5CMD ["/bin/bash"]0 B

6ARG mkl_version=2018.1.1630 B

7ENV TZ=America/Los_Angeles0 B

8|1 mkl_version=2020.1.217 /bin/sh -c ln199 B

9|1 mkl_version=2020.1.217 /bin/sh -c apt-get744.94 MB

10|1 mkl_version=2020.1.217 /bin/sh -c apt-get1.33 MB

11|1 mkl_version=2020.1.217 /bin/sh -c echo534 B

12|1 mkl_version=2020.1.217 /bin/sh -c apt-get11.82 MB

13|1 mkl_version=2020.1.217 /bin/sh -c mkdir186 B

14ADD file ... in /usr/local/src/mkl/ 496.39 MB

15|1 mkl_version=2020.1.217 /bin/sh -c echo1002.48 MB

16|1 mkl_version=2020.1.217 /bin/sh -c apt-get140.34 KB

17|1 mkl_version=2020.1.217 /bin/sh -c apt-get22.47 MB

18|1 mkl_version=2020.1.217 /bin/sh -c update-alternatives4.98 KB

19|1 mkl_version=2020.1.217 /bin/sh -c update-alternatives5.01 KB

20/bin/sh -c apt-get update &&1.17 MB

21/bin/sh -c apt-get update &&1.34 MB

22ARG APP_BSRC=/usr/local/src0 B

23ARG ST_SRC=/usr/local/src/samtools0 B

24ARG APP_BBIN=/usr/local/bin0 B

25ARG ST_INSTALL=/usr/local0 B

26ARG THE_APP=htslib0 B

27|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools26.2 MB

28ARG THE_APP=samtools0 B

29|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools25.25 MB

30ARG THE_APP=bcftools0 B

31|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools18.32 MB

32|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools596.43 KB

33|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools0 B

34|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools187 B

35|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools19.95 MB

36|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools373.97 KB

37|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools10.16 MB

38|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools164.12 KB

39|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools840.22 KB

40|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools2.09 MB

41|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools492.47 KB

42|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools1.29 MB

43|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools1.09 MB

44|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools16.69 MB

45|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools1.62 MB

46ARG ra_version0 B

47ENV R_VERSION=3.6.30 B

48|1 ra_version=3.6.3 /bin/sh -c mkdir63.5 MB

49|1 ra_version=3.6.3 /bin/sh -c mkdir174 B

50|1 ra_version=3.6.3 /bin/sh -c echo119.95 MB

51|1 ra_version=3.6.3 /bin/sh -c ln207 B

52ARG p_version=3.6.3p0 B

53|2 p_version=3.6.3p ra_version=3.6.3 /bin/sh -c119.92 MB

54|2 p_version=3.6.3p ra_version=3.6.3 /bin/sh -c207 B

55|2 p_version=3.6.3p ra_version=3.6.3 /bin/sh -c182 B

56|2 p_version=3.6.3p ra_version=3.6.3 /bin/sh -c18.32 KB

57ADD file ... in /usr/local/bin/ 604 B

58|2 p_version=3.6.3p ra_version=3.6.3 /bin/sh -c192 B

59ARG git_branch0 B

60ENV ANALYSIS_PIPELINE_BRANCH=master0 B

61|1 git_branch=master /bin/sh -c echo0 B

62|1 git_branch=master /bin/sh -c mkdir92.31 MB

63|1 git_branch=master /bin/sh -c ln176 B

64|1 git_branch=master /bin/sh -c R_switch193 B

65|1 git_branch=master /bin/sh -c echo0 B

66|1 git_branch=master /bin/sh -c Rscript18.99 MB

67|1 git_branch=master /bin/sh -c Rscript163.12 KB

68|1 git_branch=master /bin/sh -c echo0 B

69|1 git_branch=master /bin/sh -c cd140.15 MB

70|1 git_branch=master /bin/sh -c R_switch196 B

71|1 git_branch=master /bin/sh -c echo0 B

72|1 git_branch=master /bin/sh -c Rscript18.98 MB

73|1 git_branch=master /bin/sh -c Rscript163.09 KB

74|1 git_branch=master /bin/sh -c echo0 B

75|1 git_branch=master /bin/sh -c cd140.17 MB

76ARG git_branch0 B

77ENV ANALYSIS_PIPELINE_BRANCH=devel0 B

78|1 git_branch=devel /bin/sh -c echo0 B

79|1 git_branch=devel /bin/sh -c mkdir92.32 MB

80ENV AP_LINK=/usr/local/analysis_pipeline0 B

81|1 git_branch=devel /bin/sh -c if166 B

82|1 git_branch=devel /bin/sh -c ln176 B

83|1 git_branch=devel /bin/sh -c R_switch194 B

84|1 git_branch=devel /bin/sh -c echo0 B

85|1 git_branch=devel /bin/sh -c cd3.33 MB

86|1 git_branch=devel /bin/sh -c R_switch194 B

87|1 git_branch=devel /bin/sh -c echo0 B

88|1 git_branch=devel /bin/sh -c echo0 B

89|1 git_branch=devel /bin/sh -c cd3.33 MB

90ARG git_branch0 B

91ENV ANALYSIS_PIPELINE_BRANCH=devel0 B

92|1 git_branch=devel /bin/sh -c echo0 B

93ENV AP_DIR=/usr/local/src/topmed_devel0 B

94|1 git_branch=devel /bin/sh -c if13.43 KB

95ENV AP_LINK=/usr/local/analysis_pipeline0 B

96|1 git_branch=devel /bin/sh -c if166 B

97|1 git_branch=devel /bin/sh -c ln175 B

98ADD file ... in /usr/local/bin 3 KB

99ADD file ... in /usr/local/bin 3 KB

100|1 git_branch=devel /bin/sh -c groupadd5.59 KB

101|1 git_branch=devel /bin/sh -c mkdir266 B

102|1 git_branch=devel /bin/sh -c sed1.87 KB

103|1 git_branch=devel /bin/sh -c sed1.87 KB

104|1 git_branch=devel /bin/sh -c sed1.87 KB

105ADD file ... in /usr/local/bin 242 B

106USER topmed:topmed0 B

107ENTRYPOINT ["/usr/local/bin/umask.sh"]0 B

Command

ADD file:1e8d02626176dc8141df3c0a1365774ce73d79934654fe24a4b1e7f173108232 in /