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arkajyotibhattacharya/ec-other-spacna-50x50:v1

Manifest digest

sha256:d958d438d46ad5f2b599db80d59649cfbcae026062349306f1b0150543ad06c9

OS/ARCH

linux/amd64

Compressed size

2.56 GB

Last pushed

22 days by arkajyotibhattacharya

Type

Image

Manifest digest

sha256:d958d438d46ad5f2b599db80d59649cfbcae026062349306f1b0150543ad06c9

Image Layers

Image Layers

1ARG RELEASE0 B
2ARG LAUNCHPAD_BUILD_ARCH0 B
3LABEL org.opencontainers.image.ref.name=ubuntu0 B
4LABEL org.opencontainers.image.version=24.040 B
5ADD file ... in / 28.35 MB
6CMD ["/bin/bash"]0 B
7ENV R_VERSION=4.5.20 B
8ENV R_HOME=/usr/local/lib/R0 B
9ENV TZ=Etc/UTC0 B
10COPY scripts/install_R_source.sh /rocker_scripts/install_R_source.sh # buildkit1.81 KB
11RUN /bin/sh -c /rocker_scripts/install_R_source.sh #293.89 MB
12ENV CRAN=https://p3m.dev/cran/__linux__/noble/2026-03-100 B
13ENV LANG=en_US.UTF-80 B
14COPY scripts/bin/ /rocker_scripts/bin/ # buildkit2.76 KB
15COPY scripts/setup_R.sh /rocker_scripts/setup_R.sh # buildkit1.47 KB
16RUN /bin/sh -c if grep27.17 MB
17COPY scripts/install_tidyverse.sh /rocker_scripts/install_tidyverse.sh # buildkit899 B
18RUN /bin/sh -c /rocker_scripts/install_tidyverse.sh #196.26 MB
19ENV S6_VERSION=v2.1.0.20 B
20ENV RSTUDIO_VERSION=2026.01.1+4030 B
21ENV DEFAULT_USER=rstudio0 B
22COPY scripts/install_rstudio.sh /rocker_scripts/install_rstudio.sh # buildkit1.87 KB
23COPY scripts/install_s6init.sh /rocker_scripts/install_s6init.sh # buildkit750 B
24COPY scripts/default_user.sh /rocker_scripts/default_user.sh # buildkit716 B
25COPY scripts/init_set_env.sh /rocker_scripts/init_set_env.sh # buildkit522 B
26COPY scripts/init_userconf.sh /rocker_scripts/init_userconf.sh # buildkit3.13 KB
27COPY scripts/pam-helper.sh /rocker_scripts/pam-helper.sh # buildkit345 B
28RUN /bin/sh -c /rocker_scripts/install_rstudio.sh #344.19 MB
29EXPOSE [8787/tcp]0 B
30CMD ["/init"]0 B
31COPY scripts/install_pandoc.sh /rocker_scripts/install_pandoc.sh # buildkit1.25 KB
32RUN /bin/sh -c /rocker_scripts/install_pandoc.sh #33.3 MB
33COPY scripts/install_quarto.sh /rocker_scripts/install_quarto.sh # buildkit1.05 KB
34RUN /bin/sh -c /rocker_scripts/install_quarto.sh #717.24 KB
35COPY scripts /rocker_scripts # buildkit17.68 KB
36ARG SEURAT_REF=cran0 B
37RUN |1 SEURAT_REF=cran /bin/sh -c32 B
38RUN |1 SEURAT_REF=cran /bin/sh -c293 B
39ENV R_PKG_INSTALL_ARGS=--no-html0 B
40RUN |1 SEURAT_REF=cran /bin/sh -c121.81 MB
41RUN |1 SEURAT_REF=cran /bin/sh -c9.23 MB
42RUN |1 SEURAT_REF=cran /bin/sh -c218 B
43ENV R_LIBS_USER=/usr/local/lib/R/custom-lib0 B
44RUN |1 SEURAT_REF=cran /bin/sh -c560.42 MB
45RUN |1 SEURAT_REF=cran /bin/sh -c61.93 MB
46RUN |1 SEURAT_REF=cran /bin/sh -c13.41 MB
47RUN |1 SEURAT_REF=cran /bin/sh -c8.76 MB
48RUN |1 SEURAT_REF=cran /bin/sh -c284 B
49CMD ["R"]0 B
50USER root0 B
51LABEL org.opencontainers.image.title=EC5 spaCNA 50x50 exhaustive0 B
52ENV DEBIAN_FRONTEND=noninteractive PIP_DISABLE_PIP_VERSION_CHECK=1 PYTHONUNBUFFERED=1 PATH=/opt/spacna-python/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
53RUN /bin/sh -c apt-get update29.66 MB
54RUN /bin/sh -c python3 -m760.78 MB
55RUN /bin/sh -c R -q23.89 MB
56RUN /bin/sh -c R -q15.71 MB
57COPY vendor/pipeline/ /opt/spacna-pipeline/ # buildkit28.8 KB
58COPY vendor/spacna/ /opt/spacna-source/ # buildkit142.01 KB
59COPY vendor/resources/ /opt/resources/ # buildkit226.31 KB
60COPY vendor/torch/ /opt/preloaded-torch/ # buildkit90.66 MB
61COPY 00_shared.R 01_build_manifest.R 02_run_one_window.R 03_run_all_windows_parallel.R24.82 KB
62COPY python_deterministic/ /opt/workflow/python_deterministic/ # buildkit479 B
63RUN /bin/sh -c chmod 075570.03 KB
64VOLUME [/input /output /cache]0 B
65WORKDIR /workspace99 B
66ENTRYPOINT ["/opt/workflow/ec5-spacna"]0 B
67CMD ["help"]0 B
68LABEL org.opencontainers.image.title=Other-EC sequential spaCNA 50x500 B
69ENV SPACNA_INPUT_DIR=/input SPACNA_OUTPUT_ROOT=/output SPACNA_WINDOW_HEIGHT=50 SPACNA_WINDOW_WIDTH=500 B
70COPY 00_shared.R 01_build_manifest.R 02_run_one_window.R 03_run_all_windows_parallel.R28.37 KB
71COPY python_deterministic/ /opt/ec-cohort/python_deterministic/ # buildkit476 B
72RUN /bin/sh -c chmod 07552.08 KB
73WORKDIR /workspace32 B
74ENTRYPOINT ["/opt/ec-cohort/ec-spacna"]0 B
75CMD ["help"]0 B

Command

 ARG RELEASE