broadinstitute/dig-loam:ensemblvep_r107_GRCh38

Manifest digest

sha256:b76ded113d030489f347bb07343169dc2988a18b969202ff8595231e0f812852

OS/ARCH

linux/amd64

Compressed size

341.15 MB

Last pushed

about 3 years by ryankbroad

Type

Image

Manifest digest

sha256:b76ded113d030489f347bb07343169dc2988a18b969202ff8595231e0f812852

Image Layers

Image Layers

1ARG RELEASE0 B

2ARG LAUNCHPAD_BUILD_ARCH0 B

3LABEL org.opencontainers.image.ref.name=ubuntu0 B

4LABEL org.opencontainers.image.version=18.040 B

5ADD file ... in / 24.5 MB

6CMD ["/bin/bash"]0 B

7RUN /bin/sh -c apt-get update100.02 MB

8ENV OPT=/opt/vep0 B

9ENV OPT_SRC=/opt/vep/src0 B

10ENV PERL5LIB_TMP=:/opt/vep/src/ensembl-vep:/opt/vep/src/ensembl-vep/modules0 B

11ENV PERL5LIB=:/opt/vep/src/ensembl-vep:/opt/vep/src/ensembl-vep/modules:/opt/vep/src/bioperl-live0 B

12ENV KENT_SRC=/opt/vep/src/kent-335_base/src0 B

13ENV HTSLIB_DIR=/opt/vep/src/htslib0 B

14ENV MACHTYPE=x86_640 B

15ENV DEPS=/opt/vep/src0 B

16ENV PATH=/opt/vep/src/ensembl-vep:/opt/vep/src/var_c_code:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B

17ENV LANG_VAR=en_US.UTF-80 B

18RUN /bin/sh -c useradd -r4.36 KB

19USER vep0 B

20COPY /opt/vep/src /opt/vep/src # buildkit71.19 MB

21USER root0 B

22WORKDIR /opt/vep/src/bioperl-ext/Bio/Ext/Align/32 B

23RUN /bin/sh -c perl Makefile.PL1.15 MB

24WORKDIR /opt/vep/src/ensembl-xs32 B

25RUN /bin/sh -c perl Makefile.PL443.33 KB

26WORKDIR /opt/vep/src32 B

27RUN /bin/sh -c ensembl-vep/travisci/build_c.sh &&73.63 MB

28ENV LC_ALL=en_US.UTF-80 B

29ENV LANG=en_US.UTF-80 B

30USER vep0 B

31ENV PERL5LIB=:/opt/vep/src/ensembl-vep:/opt/vep/src/ensembl-vep/modules0 B

32WORKDIR /opt/vep/src/ensembl-vep32 B

33RUN /bin/sh -c echo >>4.2 MB

34USER root0 B

35RUN /bin/sh -c apt-get update19.45 MB

36WORKDIR /opt/samtools149 B

37RUN /bin/sh -c wget https://github.com/samtools/samtools/releases/download/1.16.1/samtools-1.16.1.tar.bz240.37 MB

38WORKDIR /opt32 B

39RUN /bin/sh -c git clone6.2 MB

40ENV PERL5LIB=:/opt/vep/src/ensembl-vep:/opt/vep/src/ensembl-vep/modules:/usr/local/bin/UTRannotator0 B

41USER vep0 B

Command

 ARG RELEASE