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encodedcc/long-read-rna-pipeline:PIP-861-tech-reps_24ceb77e-19dd-4905-8471-fbd69e3f89f6

Manifest digest

sha256:24e390fb474195ae929eb8066934ea475540d7a55c924345a71a008635df54e2

OS/ARCH

linux/amd64

Compressed size

1.24 GB

Last pushed

over 4 years by encoderobot

Type

Image

Manifest digest

sha256:24e390fb474195ae929eb8066934ea475540d7a55c924345a71a008635df54e2

Image Layers

Image Layers

1ADD file ... in / 42.2 MB
2/bin/sh -c rm -rf /var/lib/apt/lists/*526 B
3/bin/sh -c set -xe &&853 B
4/bin/sh -c mkdir -p /run/systemd170 B
5CMD ["/bin/bash"]0 B
6MAINTAINER Otto Jolanki0 B
7/bin/sh -c apt-get update &&59.75 MB
8/bin/sh -c add-apt-repository -y ppa:deadsnakes/ppa2.37 KB
9/bin/sh -c apt-get update &&279.04 MB
10/bin/sh -c mkdir /software131 B
11WORKDIR /software0 B
12ENV PATH=/software:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
13/bin/sh -c wget https://tukaani.org/xz/xz-5.2.3.tar.gz &&2.85 MB
14/bin/sh -c cd xz-5.2.3 &&2.86 MB
15/bin/sh -c curl -L https://github.com/lh3/minimap2/releases/download/v2.15/minimap2-2.15_x64-linux.tar.bz22.2 MB
16ENV PATH=/software/minimap2-2.15_x64-linux/:/software:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
17/bin/sh -c wget https://cran.r-project.org/bin/linux/ubuntu/xenial/r-base-core_3.3.2-1xenial0_amd64.deb20.07 MB
18/bin/sh -c yes | gdebi32.89 MB
19/bin/sh -c wget https://cran.r-project.org/bin/linux/ubuntu/xenial/r-recommended_3.3.2-1xenial0_all.deb3.02 KB
20/bin/sh -c yes | gdebi16.05 MB
21/bin/sh -c wget https://cran.r-project.org/bin/linux/ubuntu/xenial/r-base_3.3.2-1xenial0_all.deb39.91 KB
22/bin/sh -c yes | gdebi374.11 KB
23/bin/sh -c rm -rf /var/lib/apt/lists/*782 B
24/bin/sh -c echo "r <-59.66 MB
25/bin/sh -c python3.7 -m pip4.6 MB
26/bin/sh -c python3.7 -m pip4.67 MB
27/bin/sh -c python3.7 -m pip121.35 MB
28/bin/sh -c python -m pip34.59 MB
29/bin/sh -c python3.7 -m pip24.73 KB
30/bin/sh -c python3.7 -m pip76.35 MB
31/bin/sh -c wget https://github.com/arq5x/bedtools2/releases/download/v2.29.0/bedtools-2.29.0.tar.gz19.67 MB
32/bin/sh -c tar xzvf bedtools-2.29.0.tar.gz19.32 MB
33/bin/sh -c cd bedtools2/ &&33.36 MB
34ENV PATH=/software/bedtools2/bin:/software/minimap2-2.15_x64-linux/:/software:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
35/bin/sh -c git clone -b381.76 MB
36/bin/sh -c chmod 755 TranscriptClean/accessory_scripts/*19.92 KB
37ENV PATH=/software/TranscriptClean/accessory_scripts:/software/TranscriptClean:/software/bedtools2/bin:/software/minimap2-2.15_x64-linux/:/software:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
38/bin/sh -c git clone --branch1.89 MB
39/bin/sh -c git clone -b57.15 MB
40/bin/sh -c rm -rf 132 B
41/bin/sh -c python3.7 -m pip26.62 KB
42/bin/sh -c git clone -b20.61 KB
43/bin/sh -c chmod 755 ENCODE-references/SIRV_ERCC/*3 KB
44ENV PATH=/software/ENCODE-references/SIRV_ERCC:/software/TranscriptClean/accessory_scripts:/software/TranscriptClean:/software/bedtools2/bin:/software/minimap2-2.15_x64-linux/:/software:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
45/bin/sh -c mkdir -p long-rna-seq-pipeline/src179 B
46COPY dir:3edbccc2e1d35a338a24e7b7a343d509e6d08fae2c76aaa791fb0ac738e8266a in long-rna-seq-pipeline/src 3.54 KB
47ENV PATH=/software/long-rna-seq-pipeline/src:/software/ENCODE-references/SIRV_ERCC:/software/TranscriptClean/accessory_scripts:/software/TranscriptClean:/software/bedtools2/bin:/software/minimap2-2.15_x64-linux/:/software:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
48ARG GIT_COMMIT_HASH0 B
49ENV GIT_HASH=37d2c5d93f64f854b721f47ae0f5fa3dffa37ec50 B
50ARG BRANCH0 B
51ENV BUILD_BRANCH=PIP-861-tech-reps0 B
52ARG BUILD_TAG0 B
53ENV MY_TAG=encodedcc/long-read-rna-pipeline:PIP-861-tech-reps_24ceb77e-19dd-4905-8471-fbd69e3f89f60 B

Command

ADD file:4fe14d9555e739e4d006eecb273a2f4a53e6dbe93bd0db26d5f999168b5d4114 in /