Sign inSign up

mgibio/vep_helper-cwl:vep_113.3_v1

Machine learning & AI
Data science
Manifest digest

sha256:71d81af59381c1e0239182583e5a83d588dd76e119d319124232592b0d7a9902

OS/ARCH

linux/amd64

Compressed size

280.12 MB

Last pushed

almost 2 years by mgibio

Type

Image

Manifest digest

sha256:71d81af59381c1e0239182583e5a83d588dd76e119d319124232592b0d7a9902

Image Layers

Image Layers

1ARG RELEASE0 B
2ARG LAUNCHPAD_BUILD_ARCH0 B
3LABEL org.opencontainers.image.ref.name=ubuntu0 B
4LABEL org.opencontainers.image.version=22.040 B
5ADD file ... in / 28.17 MB
6CMD ["/bin/bash"]0 B
7RUN /bin/sh -c apt-get update131.33 MB
8ENV OPT=/opt/vep0 B
9ENV OPT_SRC=/opt/vep/src0 B
10ENV PERL5LIB_TMP=:/opt/vep/src/ensembl-vep:/opt/vep/src/ensembl-vep/modules:/plugins0 B
11ENV PERL5LIB=:/opt/vep/src/ensembl-vep:/opt/vep/src/ensembl-vep/modules:/plugins:/opt/vep/src/bioperl-live0 B
12ENV KENT_SRC=/opt/vep/src/kent-335_base/src0 B
13ENV HTSLIB_DIR=/opt/vep/src/htslib0 B
14ENV DEPS=/opt/vep/src0 B
15ENV PATH=/opt/vep/src/ensembl-vep:/opt/vep/src/var_c_code:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
16ENV LANG_VAR=en_US.UTF-80 B
17ARG BRANCH=release/1130 B
18RUN |1 BRANCH=release/113 /bin/sh -c4.14 KB
19USER vep0 B
20COPY --chown=vep:vep /opt/vep/src /opt/vep/src #13.54 MB
21USER root0 B
22WORKDIR /opt/vep/src/bioperl-ext/Bio/Ext/Align/32 B
23RUN |1 BRANCH=release/113 /bin/sh -c1.13 MB
24WORKDIR /opt/vep/src/ensembl-xs32 B
25RUN |1 BRANCH=release/113 /bin/sh -c470.85 KB
26WORKDIR /opt/vep/src32 B
27RUN |1 BRANCH=release/113 /bin/sh -c27.09 MB
28ENV LC_ALL=en_US.UTF-80 B
29ENV LANG=en_US.UTF-80 B
30USER vep0 B
31ENV PERL5LIB=:/opt/vep/src/ensembl-vep:/opt/vep/src/ensembl-vep/modules:/plugins0 B
32ENV VEP_NO_UPDATE=10 B
33ENV VEP_NO_HTSLIB=10 B
34ENV VEP_NO_PLUGINS=10 B
35ENV VEP_DIR_PLUGINS=/plugins0 B
36ENV VEP_PLUGINSDIR=/plugins0 B
37WORKDIR /plugins100 B
38WORKDIR /opt/vep/src/ensembl-vep32 B
39RUN |1 BRANCH=release/113 /bin/sh -c5.55 MB
40USER root0 B
41ENV PLUGIN_DEPS=https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/113/config0 B
42RUN |1 BRANCH=release/113 /bin/sh -c24.18 MB
43RUN |1 BRANCH=release/113 /bin/sh -c152 B
44RUN |1 BRANCH=release/113 /bin/sh -c439.12 KB
45RUN |1 BRANCH=release/113 /bin/sh -c1.79 KB
46RUN |1 BRANCH=release/113 /bin/sh -c433.01 KB
47USER vep0 B
48WORKDIR /plugins32 B
49RUN |1 BRANCH=release/113 /bin/sh -c8.59 MB
50ENV PATH=/plugins/GeneSplicer:/opt/vep/src/ensembl-vep:/opt/vep/src/var_c_code:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
51USER root0 B
52RUN |1 BRANCH=release/113 /bin/sh -c103 B
53USER vep0 B
54WORKDIR /data135 B
55LABEL maintainer=John Garza <[email protected]>0 B
56LABEL description=Vep helper image0 B
57USER root0 B
58RUN /bin/sh -c apt-get update38.93 MB
59WORKDIR /0 B
60RUN /bin/sh -c ln -s187 B
61WORKDIR /opt/vep/src/ensembl-vep32 B
62RUN /bin/sh -c perl INSTALL.pl32 B
63RUN /bin/sh -c mkdir -p201 B
64WORKDIR /opt/lib/perl/VEP/Plugins32 B
65RUN /bin/sh -c wget https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/113/Downstream.pm321.36 KB
66COPY vcf_check.pl /usr/bin/vcf_check.pl # buildkit941 B
67USER vep0 B

Command

 ARG RELEASE