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uwgac/topmed-devel:2.7.6

Languages & frameworks
Data science
Manifest digest

sha256:d06ea9d9305595ebdf7f8d08edab66a2942770fe40b8ab60c5fd32c98ae8887d

OS/ARCH

linux/amd64

Compressed size

3.17 GB

Last pushed

over 6 years by rollinroy

Type

Image

Manifest digest

sha256:d06ea9d9305595ebdf7f8d08edab66a2942770fe40b8ab60c5fd32c98ae8887d

Image Layers

Image Layers

1ADD file ... in / 25.45 MB
2/bin/sh -c [ -z "$(apt-get34.54 KB
3/bin/sh -c set -xe &&844 B
4/bin/sh -c mkdir -p /run/systemd163 B
5CMD ["/bin/bash"]0 B
6ARG mkl_version=2018.1.1630 B
7ENV TZ=America/Los_Angeles0 B
8|1 mkl_version=2020.1.217 /bin/sh -c ln199 B
9|1 mkl_version=2020.1.217 /bin/sh -c apt-get744.94 MB
10|1 mkl_version=2020.1.217 /bin/sh -c apt-get1.33 MB
11|1 mkl_version=2020.1.217 /bin/sh -c echo534 B
12|1 mkl_version=2020.1.217 /bin/sh -c apt-get11.82 MB
13|1 mkl_version=2020.1.217 /bin/sh -c mkdir186 B
14ADD file ... in /usr/local/src/mkl/ 496.39 MB
15|1 mkl_version=2020.1.217 /bin/sh -c echo1002.48 MB
16|1 mkl_version=2020.1.217 /bin/sh -c apt-get140.34 KB
17|1 mkl_version=2020.1.217 /bin/sh -c apt-get22.47 MB
18|1 mkl_version=2020.1.217 /bin/sh -c update-alternatives4.98 KB
19|1 mkl_version=2020.1.217 /bin/sh -c update-alternatives5.01 KB
20/bin/sh -c apt-get update &&1.17 MB
21/bin/sh -c apt-get update &&1.34 MB
22ARG APP_BSRC=/usr/local/src0 B
23ARG ST_SRC=/usr/local/src/samtools0 B
24ARG APP_BBIN=/usr/local/bin0 B
25ARG ST_INSTALL=/usr/local0 B
26ARG THE_APP=htslib0 B
27|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools26.2 MB
28ARG THE_APP=samtools0 B
29|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools25.25 MB
30ARG THE_APP=bcftools0 B
31|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools18.32 MB
32|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools596.43 KB
33|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools0 B
34|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools187 B
35|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools19.95 MB
36|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools373.97 KB
37|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools10.16 MB
38|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools164.12 KB
39|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools840.22 KB
40|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools2.09 MB
41|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools492.47 KB
42|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools1.29 MB
43|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools1.09 MB
44|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools16.69 MB
45|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools1.62 MB
46ARG ra_version0 B
47ENV R_VERSION=3.6.30 B
48|1 ra_version=3.6.3 /bin/sh -c mkdir63.5 MB
49|1 ra_version=3.6.3 /bin/sh -c mkdir174 B
50|1 ra_version=3.6.3 /bin/sh -c echo119.95 MB
51|1 ra_version=3.6.3 /bin/sh -c ln207 B
52ARG p_version=3.6.3p0 B
53|2 p_version=3.6.3p ra_version=3.6.3 /bin/sh -c119.92 MB
54|2 p_version=3.6.3p ra_version=3.6.3 /bin/sh -c207 B
55|2 p_version=3.6.3p ra_version=3.6.3 /bin/sh -c182 B
56|2 p_version=3.6.3p ra_version=3.6.3 /bin/sh -c18.32 KB
57ADD file ... in /usr/local/bin/ 604 B
58|2 p_version=3.6.3p ra_version=3.6.3 /bin/sh -c192 B
59ARG git_branch0 B
60ENV ANALYSIS_PIPELINE_BRANCH=master0 B
61|1 git_branch=master /bin/sh -c echo0 B
62|1 git_branch=master /bin/sh -c mkdir92.31 MB
63|1 git_branch=master /bin/sh -c ln176 B
64|1 git_branch=master /bin/sh -c R_switch193 B
65|1 git_branch=master /bin/sh -c echo0 B
66|1 git_branch=master /bin/sh -c Rscript18.99 MB
67|1 git_branch=master /bin/sh -c Rscript163.12 KB
68|1 git_branch=master /bin/sh -c echo0 B
69|1 git_branch=master /bin/sh -c cd140.15 MB
70|1 git_branch=master /bin/sh -c R_switch196 B
71|1 git_branch=master /bin/sh -c echo0 B
72|1 git_branch=master /bin/sh -c Rscript18.98 MB
73|1 git_branch=master /bin/sh -c Rscript163.09 KB
74|1 git_branch=master /bin/sh -c echo0 B
75|1 git_branch=master /bin/sh -c cd140.17 MB
76ARG git_branch0 B
77ENV ANALYSIS_PIPELINE_BRANCH=devel0 B
78|1 git_branch=devel /bin/sh -c echo0 B
79|1 git_branch=devel /bin/sh -c mkdir92.32 MB
80ENV AP_LINK=/usr/local/analysis_pipeline0 B
81|1 git_branch=devel /bin/sh -c if166 B
82|1 git_branch=devel /bin/sh -c ln176 B
83|1 git_branch=devel /bin/sh -c R_switch194 B
84|1 git_branch=devel /bin/sh -c echo0 B
85|1 git_branch=devel /bin/sh -c cd3.33 MB
86|1 git_branch=devel /bin/sh -c R_switch194 B
87|1 git_branch=devel /bin/sh -c echo0 B
88|1 git_branch=devel /bin/sh -c echo0 B
89|1 git_branch=devel /bin/sh -c cd3.33 MB
90ARG git_branch0 B
91ENV ANALYSIS_PIPELINE_BRANCH=devel0 B
92|1 git_branch=devel /bin/sh -c echo0 B
93ENV AP_DIR=/usr/local/src/topmed_devel0 B
94|1 git_branch=devel /bin/sh -c if13.43 KB
95ENV AP_LINK=/usr/local/analysis_pipeline0 B
96|1 git_branch=devel /bin/sh -c if166 B
97|1 git_branch=devel /bin/sh -c ln175 B
98ADD file ... in /usr/local/bin 3 KB
99ADD file ... in /usr/local/bin 3 KB
100|1 git_branch=devel /bin/sh -c groupadd5.59 KB
101|1 git_branch=devel /bin/sh -c mkdir266 B
102|1 git_branch=devel /bin/sh -c sed1.87 KB
103|1 git_branch=devel /bin/sh -c sed1.87 KB
104|1 git_branch=devel /bin/sh -c sed1.87 KB
105ADD file ... in /usr/local/bin 242 B
106USER topmed:topmed0 B
107ENTRYPOINT ["/usr/local/bin/umask.sh"]0 B

Command

ADD file:1e8d02626176dc8141df3c0a1365774ce73d79934654fe24a4b1e7f173108232 in /