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mhoelzer/ribap

By mhoelzer

•Updated almost 7 years ago

Bacteria pan genome calculation and comparison pipeline on species and genus level

Image
0

1.5K

mhoelzer/ribap repository overview

License: GPL v3 Python3.6 Bash Twitter URL Twitter URL

⁠RIBAP

A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs.

⁠Docker

docker run --rm -it -v /home/user/results:/output  -v /home/user/fasta:/input mhoelzer/ribap:1.0--190919 sh -c "ribap.sh -v -p 4 -o /output/ /input/*.fasta"

Tag summary

Content type

Image

Digest

Size

1.3 GB

Last updated

about 7 years ago

docker pull mhoelzer/ribap