IARC bioinformatics platform

RNA splicing analysis using SUPPA2

Docker images for practicals of the medical genomics course held at INSA Lyon

Docker container for nextflow pipeline IARCbioinfo/strelka2-nf

Docker container for MSA nextflow pipeline

Mutational Signature repository

Docker file for nextflow pipeline IARCbioinfo/NGSCheckMate-nf

automated build for mutect-nf

Automatic build for alignment-nf

nexflow pipeline to predict neoantigens from WGS

RNA sequencing data pre-processing workflow

Docker for IARCBioinfo/facets-nf pipeline

structural variation calling with SvABA powered by nextflow

nf_coverage_demo automated build

nextflow pipeline for quality control of sequenced reads with fastqc and multiqc

Transcript- and gene-level expression quantification from RNAseq data with StringTie

Container with dependencies for table_annovar-nf

Container with dependencies for vcf_normalization-nf

Automatic build for BQSR nextflow pipeline at https://github.com/IARCbioinfo/BQSR-nf/