Laboratory of Systems Pharmacology

Single-Cell Image Analysis Package

Container for INDRA and various dependencies including REACH and Sparser.

ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration

Segmentation of cells from probability maps

BioFormats tools

Quantification module for mcmicro

headless ilastik for mcmicro pipeline

MCMICRO wrapper for Fast Phenograph

MCMICRO module for clustering with FlowSOM

MCMICRO module for Scanpy